chr3 : 3,053,715 3,054,421
706 bp 63 TFs 1 linked gene
This 706 bp open chromatin element is linked to CNTN4-AS1 and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CNTN4-AS1 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:3,048,715 – 3,059,421
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
ARID1B 3 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 425 bp overlap
ChIP K562 ENCFF938UXQ 232 bp overlap
ChIP K562 ENCFF938UXQ 433 bp overlap
ASCL1 2 datasets
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 155 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 135 bp overlap
ATF3 4 datasets
ChIP K-562 ENCSR632DCH.ATF3.K-562 370 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 371 bp overlap
ChIP K562 ENCFF921JQW 653 bp overlap
ChIP K562 ENCFF921JQW 518 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 274 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 319 bp overlap
BRD2 2 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 251 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 293 bp overlap
BRD4 4 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 477 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 371 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 184 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 640 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 303 bp overlap
ChIP K562 ENCFF673OEZ 411 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 114 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 130 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 390 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 147 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 340 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 250 bp overlap
EP300 1 dataset
ChIP K-562 ENCSR000EGE.EP300.K-562 163 bp overlap
ERG 4 datasets
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 203 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 157 bp overlap
ChIP aortic-endothelial-cell_D46 GSE139377.ERG.aortic-endothelial-cell_D46 225 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 229 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 426 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 706 bp overlap
FOS 1 dataset
ChIP K-562 ENCSR000DKB.FOS.K-562 154 bp overlap
FOSL1 5 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 638 bp overlap
ChIP K-562 ENCSR000BMV.FOSL1.K-562 151 bp overlap
ChIP K562 ENCFF455MKD 424 bp overlap
ChIP K562 ENCFF455MKD 526 bp overlap
ChIP K562 ENCFF728OTE 231 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 97 bp overlap
ChIP DE DE-FOXA2-1 632 bp overlap
ChIP DE DE-FOXA2-2 569 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 276 bp overlap
GATA1 5 datasets
ChIP K-562 GSE107726.GATA1.K-562 351 bp overlap
ChIP K-562 ENCSR000EFT.GATA1.K-562 182 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 273 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 174 bp overlap
ChIP K562 ENCFF094CMK 251 bp overlap
GATA2 5 datasets
ChIP K-562 ENCSR000DKA.GATA2.K-562 249 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 118 bp overlap
ChIP K562 ENCFF830LLA 546 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 321 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P2 320 bp overlap
GATA4 10 datasets
ChIP A-549 GSE85002.GATA4.A-549 162 bp overlap
ChIP DE DE-GATA4-1 671 bp overlap
ChIP DE DE-GATA4-2 697 bp overlap
ChIP G296S GSE85628.GATA4.G296S 173 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 173 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 223 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 256 bp overlap
ChIP foregut GSE117136.GATA4.foregut 621 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 706 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 706 bp overlap
GATA6 21 datasets
ChIP AGS GSE51705.GATA6.AGS 604 bp overlap
ChIP AGS GSE51936.GATA6.AGS 149 bp overlap
ChIP Caco-2_DIFF GSE23436.GATA6.Caco-2_DIFF 118 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 395 bp overlap
ChIP DE DE-GATA6-1 684 bp overlap
ChIP DE DE-GATA6-2 695 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 706 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 672 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 574 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 706 bp overlap
ChIP H9 ERP004206.GATA6.H9 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 706 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 664 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 273 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 491 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 660 bp overlap
ChIP foregut GSE117136.GATA6.foregut 602 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 526 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 669 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 648 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 660 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR075HTM.HDAC2.K-562 329 bp overlap
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 106 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 182 bp overlap
IRF4 1 dataset
ChIP OCI-Ly3_SHCTR GSE56857.IRF4.OCI-Ly3_SHCTR 111 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 521 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 442 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 460 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 630 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 544 bp overlap
ChIP K-562 ENCSR000EZT.JUN.K-562 199 bp overlap
ChIP K-562 ENCSR000EFS.JUN.K-562 146 bp overlap
ChIP K-562 ENCSR000FAH.JUN.K-562 132 bp overlap
JUNB 3 datasets
ChIP K-562 ENCSR000DJY.JUNB.K-562 387 bp overlap
ChIP K-562 ENCSR795IYP.JUNB.K-562 122 bp overlap
ChIP K562 ENCFF388SEP 391 bp overlap
JUND 3 datasets
ChIP K-562 ENCSR000EGN.JUND.K-562 208 bp overlap
ChIP K562 ENCFF336RCR 237 bp overlap
ChIP K562 ENCFF830LVJ 281 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 280 bp overlap
ChIP K562 ENCFF133OLU 427 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 289 bp overlap
MED1 3 datasets
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 423 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 224 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 164 bp overlap
MEF2D 2 datasets
ChIP K-562 ENCSR647ZXA.MEF2D.K-562 361 bp overlap
ChIP K562 ENCFF392LDT 421 bp overlap
MEIS2 3 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 331 bp overlap
ChIP K562 ENCFF320GSD 381 bp overlap
ChIP K562 ENCFF320GSD 373 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR000FCC.NFE2.K-562 327 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 209 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 359 bp overlap
RAD21 2 datasets
ChIP K562 ENCFF066JWO 405 bp overlap
ChIP K562 ENCFF066JWO 405 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 179 bp overlap
RELA 20 datasets
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 429 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 387 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 353 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 345 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 293 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 329 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 293 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 166 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 322 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 368 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 320 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 405 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 215 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 262 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 195 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 210 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 483 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 273 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 153 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 630 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 471 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 351 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 311 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 395 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 435 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 431 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 178 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 190 bp overlap
SMARCA4 6 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 541 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 207 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 396 bp overlap
ChIP K562 ENCFF506JCB 517 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 439 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 289 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 489 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 321 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 326 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 507 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 169 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 298 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 357 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 240 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 350 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 507 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 514 bp overlap
STAT1 1 dataset
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 170 bp overlap
STAT3 1 dataset
ChIP MDA-MB-231 GSE152203.STAT3.MDA-MB-231 153 bp overlap
TAL1 5 datasets
ChIP K-562 GSE107726.TAL1.K-562 312 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 179 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 249 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 238 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 185 bp overlap
TCF3 2 datasets
ChIP K-562 ENCSR970OJY.TCF3.K-562 279 bp overlap
ChIP K562 ENCFF319QZT 381 bp overlap
TCF4 2 datasets
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 110 bp overlap
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 207 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 82 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 261 bp overlap
ChIP K562 ENCFF053XDV 307 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 471 bp overlap