chr1 : 50,171,111 50,171,918
807 bp 87 TFs 0 linked genes
This 807 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:50,166,111 – 50,176,918
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 107 bp overlap
ATF2 1 dataset
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
Arid3a 1 dataset
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Arid3b 1 dataset
Motif DE_36h DE_36h-Arid3b_MA0601.2 7 bp overlap
CREB1 1 dataset
Motif DE_36h DE_36h-CREB1_MA0018.5 8 bp overlap
DMRT3 1 dataset
Motif DE_36h DE_36h-DMRT3_MA0610.2 7 bp overlap
DMRTA1 1 dataset
Motif DE_36h DE_36h-DMRTA1_MA1707.2 10 bp overlap
DMRTC2 1 dataset
Motif DE_36h DE_36h-DMRTC2_MA1479.2 11 bp overlap
DPRX 1 dataset
Motif DE_36h DE_36h-DPRX_MA1480.2 9 bp overlap
Dmrt1 1 dataset
Motif DE_36h DE_36h-Dmrt1_MA1603.2 9 bp overlap
EOMES 2 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 509 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 158 bp overlap
FOS::JUN 2 datasets
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 609 bp overlap
ChIP DE DE-FOXA2-2 633 bp overlap
FOXD2 1 dataset
Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap
FOXP2 1 dataset
Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap
GATA2 2 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 796 bp overlap
ChIP DE DE-GATA4-2 718 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 190 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 255 bp overlap
GATA5 2 datasets
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 761 bp overlap
ChIP DE DE-GATA6-2 807 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 441 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 558 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 392 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 793 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 681 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 489 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 665 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR000BMG.HDAC2.K-562 113 bp overlap
ISL2 1 dataset
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
JUN::JUNB 3 datasets
Motif DE_36h DE_36h-JUNJUNB_MA1132.2 8 bp overlap
Motif DE_36h DE_36h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_36h DE_36h-JUNJUNB_MA1133.2 11 bp overlap
JUND 1 dataset
Motif DE_36h DE_36h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 164 bp overlap
KLF17 1 dataset
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
KLF9 1 dataset
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
LIN54 1 dataset
Motif DE_36h DE_36h-LIN54_MA0619.2 7 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 156 bp overlap
Mecom 1 dataset
Motif DE_36h DE_36h-Mecom_MA0029.2 11 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 202 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 225 bp overlap
NFATC3 1 dataset
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
NFIB 1 dataset
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
Nfat5 1 dataset
Motif DE_36h DE_36h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Nkx3-1 1 dataset
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Nr2e1 1 dataset
Motif DE_36h DE_36h-Nr2e1_MA0676.1 9 bp overlap
Nr2e3 1 dataset
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
PAX6 1 dataset
Motif DE_36h DE_36h-PAX6_MA0069.1 14 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 277 bp overlap
POU2F3 1 dataset
Motif DE_36h DE_36h-POU2F3_MA0627.3 9 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU5F1B 2 datasets
Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 146 bp overlap
Rhox11 1 dataset
Motif DE_36h DE_36h-Rhox11_MA0629.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 705 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 258 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 640 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 567 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
SOX10 1 dataset
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 424 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 147 bp overlap
SRF 1 dataset
Motif DE_36h DE_36h-SRF_MA0083.3 16 bp overlap
Six3 1 dataset
Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap
Sox11 1 dataset
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
Stat6 1 dataset
Motif DE_36h DE_36h-Stat6_MA0520.2 10 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_36h DE_36h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 138 bp overlap
THRB 1 dataset
Motif DE_36h DE_36h-THRB_MA1575.2 17 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Vdr 1 dataset
Motif DE_36h DE_36h-Vdr_MA0693.4 7 bp overlap
ZKSCAN1 2 datasets
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF143 1 dataset
ChIP HEK293T GSE39263.ZNF143.HEK293T 231 bp overlap
ZNF24 1 dataset
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
ZNF324 1 dataset
Motif DE_36h DE_36h-ZNF324_MA1977.2 14 bp overlap
ZNF354A 1 dataset
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 1 dataset
Motif DE_36h DE_36h-ZNF384_MA1125.2 8 bp overlap
ZNF75A 1 dataset
Motif DE_36h DE_36h-ZNF75A_MA2097.1 12 bp overlap
Zic2 1 dataset
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap