chr1 : 48,050,022 48,050,556
534 bp 58 TFs 0 linked genes
This 534 bp open chromatin element has no linked target genes and is bound by 58 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:48,045,022 – 48,055,556
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AR 2 datasets
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 67 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 74 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 187 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 278 bp overlap
BRD4 2 datasets
ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 146 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
CTCF 4 datasets
ChIP body of pancreas ENCFF438KTE 247 bp overlap
ChIP body of pancreas ENCFF798MEO 191 bp overlap
ChIP body of pancreas ENCFF881RGF 198 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 180 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 104 bp overlap
ChIP BLaER1 ENCFF031ISE 322 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 164 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 155 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 104 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 228 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCFF245KNK 353 bp overlap
ChIP HeLa-S3 ENCSR680OFU.EP300.HeLa-S3 428 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 332 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 534 bp overlap
EZH2 2 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 212 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 61 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 359 bp overlap
FOXA2 2 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 175 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 222 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 129 bp overlap
GATA4 12 datasets
ChIP DE DE-GATA4-1 383 bp overlap
ChIP DE DE-GATA4-2 390 bp overlap
ChIP G296S GSE85628.GATA4.G296S 335 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 335 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 192 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 198 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 198 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 181 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 225 bp overlap
ChIP foregut GSE117136.GATA4.foregut 398 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 487 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 507 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 291 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 235 bp overlap
ChIP DE DE-GATA6-1 379 bp overlap
ChIP DE DE-GATA6-2 427 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 473 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 484 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 450 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 377 bp overlap
ChIP H9 ERP004206.GATA6.H9 239 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 442 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 528 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 175 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 257 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 348 bp overlap
ChIP foregut GSE117136.GATA6.foregut 378 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 360 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 453 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 436 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 467 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 399 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 468 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 309 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 307 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 423 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 335 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 228 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 392 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCFF642OHL 108 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 534 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 363 bp overlap
KLF17 1 dataset
ChIP HEK293 ENCSR065WUF.KLF17.HEK293 534 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 382 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 452 bp overlap
MED1 5 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 134 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 73 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 395 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 82 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 379 bp overlap
NR3C1 15 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 120 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 52 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 170 bp overlap
ChIP BEAS-2B_DEX GSE135127.NR3C1.BEAS-2B_DEX 115 bp overlap
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 162 bp overlap
ChIP BEAS-2B_TNF-DEX GSE125623.NR3C1.BEAS-2B_TNF-DEX 80 bp overlap
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 142 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 60 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 66 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.NR3C1.HeLa-B2_TA_TNFA 87 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 146 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 201 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 232 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 305 bp overlap
ChIP hMSC_DMI GSE68864.NR3C1.hMSC_DMI 91 bp overlap
NRF1 1 dataset
ChIP HeLa-S3 GSE108856.NRF1.HeLa-S3 405 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 272 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 466 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 259 bp overlap
PDX1 4 datasets
ChIP hESC GSE58685.PDX1.hESC 276 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 297 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 350 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 448 bp overlap
PGR 6 datasets
ChIP AB32 GSE31129.PGR.AB32 106 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 66 bp overlap
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 55 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 209 bp overlap
ChIP myometrium_TP1 GSE137550.PGR.myometrium_TP1 259 bp overlap
ChIP myometrium_TP2 GSE137550.PGR.myometrium_TP2 186 bp overlap
PHIP 1 dataset
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 250 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 284 bp overlap
POLR2A 2 datasets
ChIP gastroesophageal sphincter ENCFF070PCA 126 bp overlap
ChIP spleen ENCFF044PYR 143 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 54 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 52 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 195 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 270 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 212 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 456 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 516 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 418 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 430 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 441 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 453 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 453 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 207 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 241 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 534 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 188 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 534 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 157 bp overlap
SMARCC1 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 468 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 147 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 534 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 132 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 499 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 240 bp overlap
SS18 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 531 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 291 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 409 bp overlap
TBX5 2 datasets
ChIP G296S_4 GSE85628.TBX5.G296S_4 243 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 253 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF673QAB 358 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 289 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 209 bp overlap
USF2 2 datasets
ChIP HeLa-S3 ENCFF765YUZ 291 bp overlap
ChIP HeLa-S3 ENCSR000ECW.USF2.HeLa-S3 164 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 411 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 212 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 126 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 173 bp overlap
ZNF490 1 dataset
ChIP HEK293 GSE76494.ZNF490.HEK293 116 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 205 bp overlap