chr2 : 197,143,874 197,144,411
537 bp 70 TFs 3 linked genes
This 537 bp open chromatin element is linked to ANKRD44, PGAP1, and SF3B1 and is bound by 70 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
ANKRD44 166.6 kb Distal Multiome+HiCAR
PGAP1 217.4 kb Distal Multiome
SF3B1 290.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:197,138,874 – 197,149,411
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 17 datasets
ChIP LNCaP-C4-2B_R1881_SHCTR GSE61268.AR.LNCaP-C4-2B_R1881_SHCTR 132 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 135 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 155 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 119 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 225 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 170 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 239 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 221 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 134 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 185 bp overlap
ChIP MDA-MB-453 ERP001226.AR.MDA-MB-453 226 bp overlap
ChIP MDA-MB-453_DHT GSE74069.AR.MDA-MB-453_DHT 273 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 194 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 188 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 254 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 147 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 127 bp overlap
BRD4 7 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 180 bp overlap
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 537 bp overlap
ChIP CLL_patient3 GSE109411.BRD4.CLL_patient3 477 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 247 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 534 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 314 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 253 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 159 bp overlap
CHD2 3 datasets
ChIP SK-N-SH ENCFF669KMB 281 bp overlap
ChIP SK-N-SH ENCFF669KMB 80 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 179 bp overlap
DMRTA2 1 dataset
Motif DE_60h DE_60h-DMRTA2_MA1478.2 6 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 282 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 217 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 209 bp overlap
ESR1 5 datasets
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 223 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 236 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 220 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 274 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 281 bp overlap
FIGLA 2 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA1 3 datasets
ChIP LAPC-4_CST_DHT GSE123618.FOXA1.LAPC-4_CST_DHT 199 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 210 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 275 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 537 bp overlap
ChIP DE DE-FOXA2-2 515 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_36h DE_36h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap
GATA2 1 dataset
ChIP SK-N-SH ENCFF764OZD 210 bp overlap
GATA3 5 datasets
ChIP BE2C GSE65664.GATA3.BE2C 116 bp overlap
ChIP SH-SY5Y ENCFF475HYF 194 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 142 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 100 bp overlap
ChIP SK-N-SH ENCFF040SSB 216 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 537 bp overlap
ChIP DE DE-GATA4-2 537 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 537 bp overlap
ChIP DE DE-GATA6-2 537 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 296 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 537 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 260 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 515 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 209 bp overlap
Hic1 2 datasets
Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap
Motif DE_60h DE_60h-Hic1_MA0739.2 8 bp overlap
IKZF1 2 datasets
Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
IRF7 1 dataset
Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 167 bp overlap
Irf1 1 dataset
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 267 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 276 bp overlap
MGA::EVX1 2 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MYB 1 dataset
Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap
MYCN 1 dataset
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 125 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 209 bp overlap
NANOG 2 datasets
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 167 bp overlap
ChIP LNCaP_pNanog8_Dox GSE74799.NANOG.LNCaP_pNanog8_Dox 150 bp overlap
NFATC3 1 dataset
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 1 dataset
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Nr2e3 2 datasets
Motif DE_36h DE_36h-Nr2e3_MA0164.2 6 bp overlap
Motif DE_60h DE_60h-Nr2e3_MA0164.2 6 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 244 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 171 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 470 bp overlap
Prdm5 1 dataset
Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 158 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 214 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 330 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 481 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 302 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 275 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 209 bp overlap
SOX13 1 dataset
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 316 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 289 bp overlap
SOX2 1 dataset
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
ChIP RH4 GSE116344.SOX8.RH4 210 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
STAT3 1 dataset
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 181 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Stat2 1 dataset
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 127 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 216 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 285 bp overlap
TEAD1 2 datasets
Motif DE_36h DE_36h-TEAD1_MA0090.4 9 bp overlap
Motif DE_60h DE_60h-TEAD1_MA0090.4 9 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 190 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 363 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 363 bp overlap
ZEB1 2 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF354C 2 datasets
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
ZNF675 2 datasets
Motif DE_36h DE_36h-ZNF675_MA1714.2 19 bp overlap
Motif DE_60h DE_60h-ZNF675_MA1714.2 19 bp overlap
Zic1::Zic2 2 datasets
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 2 datasets
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap