chr2 : 186,329,556 186,330,359
803 bp 69 TFs 0 linked genes
This 803 bp open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:186,324,556 – 186,335,359
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
Arid3a 2 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DUX4 3 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 328 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 507 bp overlap
ESRRB 1 dataset
Motif DE_12h DE_12h-ESRRB_MA0141.4 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 603 bp overlap
ChIP DE DE-FOXA2-2 530 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 582 bp overlap
ChIP DE DE-GATA4-2 583 bp overlap
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 269 bp overlap
GATA5 1 dataset
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 141 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 167 bp overlap
ChIP DE DE-GATA6-1 551 bp overlap
ChIP DE DE-GATA6-2 580 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 546 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 579 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 616 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 347 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 564 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 536 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 326 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 133 bp overlap
ChIP HepG2 ENCFF854JLR 173 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
KLF3 1 dataset
Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
NANOG 4 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 622 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 247 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 274 bp overlap
ChIP hESC GSE18292.NANOG.hESC 100 bp overlap
NR1I3 1 dataset
Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap
NR5A1 1 dataset
Motif DE_12h DE_12h-NR5A1_MA1540.3 12 bp overlap
Nr5A2 1 dataset
Motif DE_12h DE_12h-Nr5A2_MA0505.3 9 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
POU1F1 1 dataset
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 411 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 363 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 461 bp overlap
PPARG 1 dataset
Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 315 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 519 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 260 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 459 bp overlap
SOX9 1 dataset
Motif DE_12h DE_12h-SOX9_MA0077.2 8 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP2C 1 dataset
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF324 1 dataset
Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap
ZNF410 1 dataset
Motif DE_12h DE_12h-ZNF410_MA0752.2 16 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap