chr2 : 180,071,380 – 180,072,105

725 bp 93 TFs 0 linked genes

This 725 bp open chromatin element has no linked target genes and is bound by 93 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

93 transcription factors

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 203 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

Arid5a 1 dataset

Motif DE_12h DE_12h-Arid5a_MA0602.2 8 bp overlap

BARX1 1 dataset

Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap

BCOR 2 datasets

ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 204 bp overlap

BSX 1 dataset

Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 164 bp overlap

CUX1 1 dataset

Motif DE_12h DE_12h-CUX1_MA0754.3 9 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF896HSY 76 bp overlap

DLX1 1 dataset

Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap

Dlx3 1 dataset

Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 114 bp overlap

EN2 1 dataset

Motif DE_12h DE_12h-EN2_MA0642.3 7 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 185 bp overlap

ERF::HOXB13 1 dataset

Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap

ETV2::DRGX 1 dataset

Motif DE_12h DE_12h-ETV2DRGX_MA1940.2 12 bp overlap

ETV2::HOXB13 1 dataset

Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap

ETV6 1 dataset

ChIP WTC11 ENCFF812SCD 331 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GBX1 1 dataset

Motif DE_12h DE_12h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap

GLI3 2 datasets

Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap

Motif ES_0h ES_0h-GLI3_MA1491.3 15 bp overlap

HESX1 1 dataset

Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap

HOXD12::ELK1 1 dataset

Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap

Hnf1A 2 datasets

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap

IRF1 1 dataset

ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 161 bp overlap

LBX1 1 dataset

Motif DE_12h DE_12h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_12h DE_12h-LHX9_MA0701.3 7 bp overlap

LIN54 1 dataset

Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 150 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap

MXI1 2 datasets

Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap

Motif ES_0h ES_0h-MXI1_MA1108.3 6 bp overlap

Msx3 1 dataset

Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 255 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 178 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 445 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 350 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 253 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 350 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 208 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 162 bp overlap

ChIP hESC GSE18292.NANOG.hESC 262 bp overlap

ChIP hESC GSE20650.NANOG.hESC 184 bp overlap

NIPBL 1 dataset

ChIP hESC GSE64758.NIPBL.hESC 217 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

Nkx2-1 1 dataset

Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap

Nobox 1 dataset

Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap

Nr2e3 1 dataset

Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap

POU2F2 2 datasets

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU2F3 3 datasets

Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

POU3F1 2 datasets

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 2 datasets

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F4 2 datasets

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 5 datasets

ChIP BG03 GSE21614.POU5F1.BG03 211 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 339 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 126 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 206 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 251 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 346 bp overlap

PRRX2 1 dataset

Motif DE_12h DE_12h-PRRX2_MA0075.4 7 bp overlap

Pparg::Rxra 2 datasets

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap

RAX 1 dataset

Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap

RBPJ 3 datasets

Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap

Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap

RXRA 1 dataset

ChIP WA01 ENCSR000BJW.RXRA.WA01 142 bp overlap

Rarg 2 datasets

Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap

Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap

Runx1 2 datasets

Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap

Motif ES_0h ES_0h-Runx1_MA0002.3 9 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 218 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 264 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 362 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 285 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 283 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 314 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 370 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 189 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 247 bp overlap

SOX4 2 datasets

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 321 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 212 bp overlap

Sox11 2 datasets

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

Motif ES_0h ES_0h-Sox11_MA0869.3 8 bp overlap

Sox17 2 datasets

Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap

Motif ES_0h ES_0h-Sox17_MA0078.3 10 bp overlap

Sox5 2 datasets

Motif DE_12h DE_12h-Sox5_MA0087.3 8 bp overlap

Motif ES_0h ES_0h-Sox5_MA0087.3 8 bp overlap

Sox6 2 datasets

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap

Sox7 2 datasets

Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap

Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 174 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 256 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 310 bp overlap

TEAD4 1 dataset

ChIP H1 ENCFF778PAX 245 bp overlap

TFAP2B 2 datasets

Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap

Motif ES_0h ES_0h-TFAP2B_MA0813.1 13 bp overlap

TP53 1 dataset

ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 92 bp overlap

TP63 2 datasets

Motif DE_12h DE_12h-TP63_MA0525.2 18 bp overlap

Motif ES_0h ES_0h-TP63_MA0525.2 18 bp overlap

TP73 2 datasets

Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap

Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 183 bp overlap

ZNF143 1 dataset

ChIP K-562 GSE39263.ZNF143.K-562 184 bp overlap

ZNF184 1 dataset

ChIP WTC11 ENCFF352POG 386 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 355 bp overlap

ZNF341 1 dataset

Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 171 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap