chr1 : 45,321,623 – 45,322,180
557 bp 54 TFs 11 linked genes
This 557 bp open chromatin element is linked to 11 target genes and is bound by 54 transcription factors.
Linked Genes
11 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HPDL 4.7 kb Proximal Proximity
TOE1 18.4 kb Distal Multiome
MUTYH 18.7 kb Distal Multiome
ZSWIM5 115.2 kb Distal Multiome
TESK2 169.4 kb Distal Multiome+HiCAR
MMACHC 178.6 kb Distal Multiome
PRDX1 200.1 kb Distal Multiome
AKR1A1 229.1 kb Distal Multiome
NASP 262.2 kb Distal Multiome
UROD 309.5 kb Distal Multiome+HiCAR
HECTD3 310.4 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:45,316,623 – 45,327,180
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 365 bp overlap
ChIP H1 ENCFF399KAM 421 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 143 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 88 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 78 bp overlap
CTCF 1 dataset
Motif DE_24h DE_24h-CTCF_MA1929.2 31 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 327 bp overlap
ChIP DE DE-FOXA2-2 450 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 354 bp overlap
ChIP DE DE-GATA4-2 408 bp overlap
Motif DE_24h DE_24h-GATA4_MA0482.3 8 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 164 bp overlap
ChIP DE DE-GATA6-2 493 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 265 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 264 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 357 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCFF299RSE 259 bp overlap
HOXB13 1 dataset
Motif DE_24h DE_24h-HOXB13_MA0901.3 9 bp overlap
Hic1 1 dataset
Motif DE_24h DE_24h-Hic1_MA0739.2 8 bp overlap
Hoxa13 1 dataset
Motif DE_24h DE_24h-Hoxa13_MA0650.4 8 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 352 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 462 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 343 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 174 bp overlap
KLF1 2 datasets
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
Motif DE_24h DE_24h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
MGA::EVX1 1 dataset
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 91 bp overlap
NFATC3 1 dataset
Motif DE_24h DE_24h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_24h DE_24h-NFATC4_MA1525.3 9 bp overlap
NKX6-3 1 dataset
Motif DE_24h DE_24h-NKX6-3_MA1530.2 8 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA0504.2 14 bp overlap
NR2F1 1 dataset
Motif DE_24h DE_24h-NR2F1_MA0017.3 12 bp overlap
Nfat5 1 dataset
Motif DE_24h DE_24h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_24h DE_24h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_24h DE_24h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_24h DE_24h-Nr2F6_MA0728.1 15 bp overlap
PATZ1 2 datasets
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
Motif DE_24h DE_24h-PATZ1_MA1961.2 11 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 134 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 257 bp overlap
Plagl1 1 dataset
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
RBPJ 1 dataset
Motif DE_24h DE_24h-RBPJ_MA1116.2 6 bp overlap
RFX1 1 dataset
Motif DE_24h DE_24h-RFX1_MA0509.3 16 bp overlap
RFX3 1 dataset
Motif DE_24h DE_24h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_24h DE_24h-RFX5_MA0510.3 14 bp overlap
Rarg 1 dataset
Motif DE_24h DE_24h-Rarg_MA0859.2 15 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 308 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 333 bp overlap
SP3 1 dataset
Motif DE_24h DE_24h-SP3_MA0746.3 11 bp overlap
SREBF1 1 dataset
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 238 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 110 bp overlap
TBP 1 dataset
Motif DE_24h DE_24h-TBP_MA0108.3 7 bp overlap
Wt1 1 dataset
Motif DE_24h DE_24h-Wt1_MA1627.2 10 bp overlap
Yy1 1 dataset
Motif DE_24h DE_24h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif DE_24h DE_24h-ZFP42_MA1651.2 13 bp overlap
ZIC4 1 dataset
Motif DE_24h DE_24h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_24h DE_24h-ZIC5_MA1584.2 15 bp overlap
ZNF341 1 dataset
Motif DE_24h DE_24h-ZNF341_MA1655.2 8 bp overlap
ZNF667 1 dataset
Motif DE_24h DE_24h-ZNF667_MA1984.2 11 bp overlap
ZNF682 1 dataset
Motif DE_24h DE_24h-ZNF682_MA1599.2 11 bp overlap
ZNF707 1 dataset
Motif DE_24h DE_24h-ZNF707_MA1715.1 15 bp overlap
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