chr2 : 170,370,354 – 170,370,644
290 bp 51 TFs 0 linked genes
This 290 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:170,365,354 – 170,375,644
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 213 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 290 bp overlap
ATF3 1 dataset
ChIP K562 ENCFF921JQW 161 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 290 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 131 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 178 bp overlap
BRD4 1 dataset
ChIP SW480 GSE73319.BRD4.SW480 128 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 164 bp overlap
CTCF 79 datasets
ChIP 22Rv1 ENCFF466OXN 95 bp overlap
ChIP 22Rv1 ENCFF466OXN 290 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 75 bp overlap
ChIP A-549 ENCSR000AUE.CTCF.A-549 78 bp overlap
ChIP B cell ENCFF500PZO 98 bp overlap
ChIP B cell ENCFF500PZO 290 bp overlap
ChIP C4-2B ENCFF821XVN 118 bp overlap
ChIP CD4-positive, alpha-beta T cell ENCFF277LDE 80 bp overlap
ChIP FT282 GSE131931.CTCF.FT282 53 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 56 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 60 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 132 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 60 bp overlap
ChIP GM23338 ENCFF832KWE 54 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 170 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 53 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 63 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 78 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 124 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 78 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 55 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 93 bp overlap
ChIP MCF-7 ENCFF139NQI 264 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 79 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 60 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 205 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 92 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 70 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 80 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 98 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 71 bp overlap
ChIP RWPE1 ENCFF200GQF 64 bp overlap
ChIP RWPE2 ENCFF911IEE 103 bp overlap
ChIP RWPE2 ENCFF911IEE 126 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 103 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 99 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 170 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 244 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 64 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 72 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 108 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 76 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 107 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 104 bp overlap
ChIP adrenal-gland ENCSR899JSO.CTCF.adrenal-gland 55 bp overlap
ChIP brain ENCFF067KUH 201 bp overlap
ChIP brain ENCFF163BBN 51 bp overlap
ChIP chondrocyte ENCFF134ORZ 128 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 68 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 150 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 100 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF257LSY 80 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 144 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF595WAL 175 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 181 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF677SUG 65 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 212 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF841TWE 167 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF883PFA 162 bp overlap
ChIP endodermal cell ENCFF471YCZ 185 bp overlap
ChIP endothelial cell ENCFF663LIE 232 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 89 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 136 bp overlap
ChIP gastroesophageal sphincter ENCFF569YIT 133 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 89 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 113 bp overlap
ChIP heart left ventricle ENCFF185CKY 132 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 113 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 50 bp overlap
ChIP nerve_tibial ENCSR469POZ.CTCF.nerve_tibial 91 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 88 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 73 bp overlap
ChIP neuron GSE115407.CTCF.neuron 128 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 103 bp overlap
ChIP sigmoid colon ENCFF397ZZF 156 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 110 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 105 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 180 bp overlap
ChIP vagina ENCSR655ECZ.CTCF.vagina 290 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 175 bp overlap
EGR1 2 datasets
ChIP K-562 ENCSR024CNP.EGR1.K-562 109 bp overlap
ChIP K562 ENCFF895KGN 188 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 169 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 180 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 171 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 142 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 208 bp overlap
GATA6 3 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 281 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 290 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 152 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000BNR.HDAC2.WA01 123 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 152 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 290 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 123 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 213 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 203 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 60 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 148 bp overlap
MYC 1 dataset
ChIP P493-6 GSE77061.MYC.P493-6 136 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 290 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 198 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 290 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 197 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 290 bp overlap
ChIP hESC GSE18292.NANOG.hESC 160 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 268 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 234 bp overlap
POLR2H 1 dataset
ChIP K562 ENCFF377NHG 101 bp overlap
POU5F1 4 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 121 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 290 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 258 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 290 bp overlap
RAD21 10 datasets
ChIP GP5D GSE51234.RAD21.GP5D 55 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 70 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 51 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 145 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 62 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 53 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 117 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-025m-Flavo-000m 81 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 75 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 137 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 256 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 247 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 206 bp overlap
SMAD2_3 1 dataset
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 212 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 172 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 136 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 203 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 243 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 230 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 217 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 220 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 180 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 75 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 228 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 186 bp overlap
SMC1A 1 dataset
ChIP A-549 GSE76893.SMC1A.A-549 66 bp overlap
SMC3 3 datasets
ChIP GP5D GSE51234.SMC3.GP5D 74 bp overlap
ChIP HEK293T_CRISPR GSE122299.SMC3.HEK293T_CRISPR 63 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 177 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 97 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 197 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 123 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 72 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 72 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 116 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 190 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 67 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 263 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 233 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 195 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 243 bp overlap
THAP11 1 dataset
ChIP HepG2 ENCFF272SWH 64 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 86 bp overlap
ZKSCAN8 1 dataset
ChIP K562 ENCFF387ETI 53 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 290 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 222 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 191 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 208 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 185 bp overlap
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