chr2 : 131,363,693 – 131,364,232
539 bp 65 TFs 1 linked gene
This 539 bp open chromatin element is linked to RAB6D and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
RAB6D at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:131,358,693 – 131,369,232
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif ES_0h ES_0h-AhrArnt_MA0006.2 5 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 248 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 188 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 154 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 146 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 392 bp overlap
E2F1 2 datasets
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 213 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 331 bp overlap
EGR3 2 datasets
Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap
Motif ES_0h ES_0h-EGR3_MA0732.2 11 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 304 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 232 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 1 dataset
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
EZH2 20 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 225 bp overlap
ChIP A673 ENCFF790MVL 179 bp overlap
ChIP A673 ENCFF955JRZ 302 bp overlap
ChIP DND-41 ENCFF187XWF 436 bp overlap
ChIP DND41 ENCSR000ASW.EZH2.DND41 402 bp overlap
ChIP H1 ENCFF232NZA 175 bp overlap
ChIP H1 ENCFF232NZA 459 bp overlap
ChIP H1 ENCFF232NZA 292 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 252 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 220 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 136 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 362 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 539 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 236 bp overlap
ChIP hepatocyte ENCFF552DZB 214 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 194 bp overlap
ChIP neural progenitor cell ENCFF018MKA 539 bp overlap
ChIP neural progenitor cell ENCFF472NFV 174 bp overlap
ChIP neural progenitor cell ENCFF472NFV 393 bp overlap
ChIP neural progenitor cell ENCFF472NFV 465 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-3 ENCSR617RSQ.EZH2_phosphoT487.PC-3 206 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 74 bp overlap
GRHL2 2 datasets
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
Motif ES_0h ES_0h-GRHL2_MA1105.3 8 bp overlap
HNRNPLL 3 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 218 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 218 bp overlap
ChIP HepG2 ENCFF355PIC 432 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
JARID2 3 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 323 bp overlap
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 358 bp overlap
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 375 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 249 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 259 bp overlap
KMT2A 3 datasets
ChIP HEK293T_N-term GSE90762.KMT2A.HEK293T_N-term 228 bp overlap
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 297 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 123 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 222 bp overlap
MTF2 2 datasets
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 204 bp overlap
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 271 bp overlap
Mafb 2 datasets
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Motif ES_0h ES_0h-Mafb_MA0117.3 11 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 310 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 203 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 175 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 344 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 528 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 174 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 323 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RARA::RXRA 1 dataset
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
RNF2 2 datasets
ChIP K-562 ENCSR138FUZ.RNF2.K-562 117 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 233 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 249 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 250 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 227 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 356 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 381 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 200 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 285 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 449 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 348 bp overlap
SP2 1 dataset
ChIP HEK293 GSE76494.SP2.HEK293 228 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 218 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 217 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 182 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 165 bp overlap
ChIP H1 ENCFF881NFR 420 bp overlap
TCFL5 2 datasets
Motif DE_12h DE_12h-TCFL5_MA0632.3 8 bp overlap
Motif ES_0h ES_0h-TCFL5_MA0632.3 8 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 257 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 403 bp overlap
UBTF 1 dataset
ChIP K-562 ENCSR000EFZ.UBTF.K-562 181 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 314 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBED4 3 datasets
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
Motif ES_0h ES_0h-ZBED4_MA2328.1 10 bp overlap
ZBTB26 3 datasets
ChIP HEK293 ENCFF752POA 444 bp overlap
ChIP HEK293 ENCFF752POA 472 bp overlap
ChIP HEK293 ENCFF752TCU 398 bp overlap
ZNF143 2 datasets
ChIP MCF-7 GSE76454.ZNF143.MCF-7 157 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 158 bp overlap
ZNF189 2 datasets
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
Motif ES_0h ES_0h-ZNF189_MA1725.2 9 bp overlap
ZNF341 1 dataset
ChIP HEK293 GSE76494.ZNF341.HEK293 131 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif ES_0h ES_0h-ZNF460_MA1596.1 16 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZNF93 3 datasets
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
Motif ES_0h ES_0h-ZNF93_MA1721.2 14 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 3 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 3 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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