chr2 : 118,693,281 – 118,693,890

609 bp 114 TFs 0 linked genes

This 609 bp open chromatin element has no linked target genes and is bound by 114 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

114 transcription factors

Ahr::Arnt 1 dataset

Motif DE_60h DE_60h-AhrArnt_MA0006.2 5 bp overlap

BARX1 1 dataset

Motif DE_60h DE_60h-BARX1_MA0875.2 6 bp overlap

BHLHE22 1 dataset

Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap

BRD4 1 dataset

ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 119 bp overlap

BSX 1 dataset

Motif DE_60h DE_60h-BSX_MA0876.2 6 bp overlap

Bcl11B 1 dataset

Motif DE_60h DE_60h-Bcl11B_MA1989.2 9 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 225 bp overlap

CTCF 1 dataset

ChIP endodermal cell ENCFF471YCZ 312 bp overlap

Crx 2 datasets

Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap

Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap

DLX1 1 dataset

Motif DE_60h DE_60h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_60h DE_60h-DLX6_MA0882.2 6 bp overlap

DPRX 2 datasets

Motif DE_48h DE_48h-DPRX_MA1480.2 9 bp overlap

Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap

Dlx3 1 dataset

Motif DE_60h DE_60h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_60h DE_60h-Dlx4_MA0881.2 6 bp overlap

EED 1 dataset

ChIP ProEs GSE59087.EED.ProEs 131 bp overlap

EN2 1 dataset

Motif DE_60h DE_60h-EN2_MA0642.3 7 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 409 bp overlap

ESR1 2 datasets

ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 261 bp overlap

ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 224 bp overlap

ETV1 1 dataset

Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap

EZH2 2 datasets

ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 235 bp overlap

ChIP neural progenitor cell ENCFF018MKA 496 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 466 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 449 bp overlap

ChIP DE DE-FOXA2-2 374 bp overlap

FOXC2 2 datasets

Motif DE_48h DE_48h-FOXC2_MA0846.2 11 bp overlap

Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap

FOXD2 2 datasets

Motif DE_48h DE_48h-FOXD2_MA0847.4 11 bp overlap

Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap

FOXD3 2 datasets

Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap

Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap

FOXE1 2 datasets

Motif DE_48h DE_48h-FOXE1_MA1487.3 12 bp overlap

Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap

GATA1 1 dataset

Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap

GATA4 2 datasets

ChIP DE DE-GATA4-1 389 bp overlap

ChIP DE DE-GATA4-2 419 bp overlap

GATA6 4 datasets

ChIP DE DE-GATA6-1 378 bp overlap

ChIP DE DE-GATA6-2 439 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 270 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 284 bp overlap

GBX1 1 dataset

Motif DE_60h DE_60h-GBX1_MA0889.2 7 bp overlap

GBX2 1 dataset

Motif DE_60h DE_60h-GBX2_MA0890.2 6 bp overlap

GSC 2 datasets

Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap

Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap

GSC2 2 datasets

Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap

Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 272 bp overlap

Gfi1B 1 dataset

Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap

HESX1 1 dataset

Motif DE_60h DE_60h-HESX1_MA0894.2 6 bp overlap

HNF1B 1 dataset

Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap

HOXA7 1 dataset

Motif DE_60h DE_60h-HOXA7_MA1498.3 6 bp overlap

IKZF2 1 dataset

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap

LBX1 1 dataset

Motif DE_60h DE_60h-LBX1_MA0618.2 7 bp overlap

LBX2 1 dataset

Motif DE_60h DE_60h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_60h DE_60h-LHX2_MA0700.3 6 bp overlap

LHX9 1 dataset

Motif DE_60h DE_60h-LHX9_MA0701.3 7 bp overlap

Lhx3 1 dataset

Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap

MED1 1 dataset

ChIP LNCaP_DHTTHZ1 GSE125245.MED1.LNCaP_DHTTHZ1 138 bp overlap

MGA::EVX1 2 datasets

Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap

Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap

MSX1 1 dataset

Motif DE_60h DE_60h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_60h DE_60h-MSX2_MA0708.3 6 bp overlap

MYB 1 dataset

Motif DE_48h DE_48h-MYB_MA0100.4 6 bp overlap

Msx3 1 dataset

Motif DE_60h DE_60h-Msx3_MA0709.2 6 bp overlap

NEUROD1 2 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 347 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 311 bp overlap

NUTM1 1 dataset

ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 461 bp overlap

Neurod2 1 dataset

Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap

Nobox 1 dataset

Motif DE_60h DE_60h-Nobox_MA0125.2 6 bp overlap

Nr1h3::Rxra 1 dataset

Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap

OTX1 2 datasets

Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap

Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap

OTX2 2 datasets

Motif DE_48h DE_48h-OTX2_MA0712.3 7 bp overlap

Motif DE_60h DE_60h-OTX2_MA0712.3 7 bp overlap

Olig2 1 dataset

Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap

PBX1 1 dataset

Motif DE_60h DE_60h-PBX1_MA0070.2 9 bp overlap

PBX3 1 dataset

Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap

PITX1 2 datasets

Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap

Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap

PITX2 2 datasets

Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap

Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap

PITX3 2 datasets

Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap

Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap

PKNOX1 1 dataset

Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap

POU4F1 1 dataset

Motif DE_60h DE_60h-POU4F1_MA0790.2 12 bp overlap

POU4F2 1 dataset

Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap

POU4F3 1 dataset

Motif DE_60h DE_60h-POU4F3_MA0791.2 12 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

PRRX2 1 dataset

Motif DE_60h DE_60h-PRRX2_MA0075.4 7 bp overlap

Prdm5 1 dataset

Motif DE_60h DE_60h-Prdm5_MA1999.2 11 bp overlap

RAX 1 dataset

Motif DE_60h DE_60h-RAX_MA0718.2 6 bp overlap

RHOXF1 2 datasets

Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap

Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap

RUNX3 1 dataset

Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap

Runx1 1 dataset

Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 442 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 327 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 251 bp overlap

SOX14 1 dataset

Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 351 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 592 bp overlap

SOX18 1 dataset

Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap

SOX8 1 dataset

Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap

SOX9 1 dataset

Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap

SRY 1 dataset

Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap

Sox1 1 dataset

Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap

Sox5 1 dataset

Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap

Spi1 2 datasets

Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap

Motif DE_60h DE_60h-Spi1_MA0080.7 13 bp overlap

T 2 datasets

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 247 bp overlap

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 183 bp overlap

TBR1 1 dataset

Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap

TBX20 1 dataset

Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap

TBX21 1 dataset

Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap

TWIST1 4 datasets

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 305 bp overlap

ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 162 bp overlap

ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 145 bp overlap

ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 305 bp overlap

Tcf12 1 dataset

Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap

YY1 1 dataset

ChIP WA01 ENCSR000BKD.YY1.WA01 188 bp overlap

ZBTB32 1 dataset

Motif DE_60h DE_60h-ZBTB32_MA1580.1 10 bp overlap

ZIC1 1 dataset

Motif DE_48h DE_48h-ZIC1_MA0696.1 14 bp overlap

ZIC4 1 dataset

Motif DE_48h DE_48h-ZIC4_MA0751.2 14 bp overlap

ZNF157 1 dataset

Motif DE_60h DE_60h-ZNF157_MA2331.1 21 bp overlap

ZNF182 1 dataset

ChIP HEK293T GSE78099.ZNF182.HEK293T 143 bp overlap

ZNF24 1 dataset

Motif DE_60h DE_60h-ZNF24_MA1124.1 13 bp overlap

ZNF274 1 dataset

Motif DE_48h DE_48h-ZNF274_MA1592.2 12 bp overlap

ZNF281 2 datasets

Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap

Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap

ZNF354A 2 datasets

Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap

Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

ZNF550 1 dataset

ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 213 bp overlap

ZNF582 1 dataset

Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap

ZNF684 1 dataset

Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap

ZSCAN4 1 dataset

Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap

Zfp335 1 dataset

Motif DE_48h DE_48h-Zfp335_MA2002.2 7 bp overlap

Zfx 3 datasets

Motif DE_48h DE_48h-Zfx_MA0146.3 10 bp overlap

Motif DE_60h DE_60h-Zfx_MA0146.3 10 bp overlap

Zic1::Zic2 1 dataset

Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap