chr2 : 116,141,674 116,142,394
720 bp 101 TFs 0 linked genes
This 720 bp open chromatin element has no linked target genes and is bound by 101 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:116,136,674 – 116,147,394
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
101 transcription factors
Source
Cell type
Alx1 1 dataset
Motif DE_12h DE_12h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_12h DE_12h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_12h DE_12h-Arx_MA0874.2 10 bp overlap
Atoh1 2 datasets
Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap
Motif DE_24h DE_24h-Atoh1_MA1467.3 7 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BATF 1 dataset
ChIP GM12878 ENCFF954REE 231 bp overlap
BATF3 1 dataset
ChIP KK-1_BirA GSE94732.BATF3.KK-1_BirA 240 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CREB1 1 dataset
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
EZH2 3 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 186 bp overlap
ChIP H1 ENCFF232NZA 720 bp overlap
ChIP neural progenitor cell ENCFF018MKA 83 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 344 bp overlap
ChIP DE DE-FOXA2-2 202 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 61 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 267 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 699 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 720 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 396 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 296 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif DE_24h DE_24h-HAND2_MA1638.2 6 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif DE_12h DE_12h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_12h DE_12h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_12h DE_12h-Hmx3_MA0898.2 9 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 276 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 196 bp overlap
Irf1 2 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 461 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 556 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 578 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 338 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MEIS1 3 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 212 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_24h DE_24h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
Motif DE_24h DE_24h-NEUROG2_MA1642.2 7 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NR2C1 2 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NR2F1 3 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif DE_24h DE_24h-NR2F1_MA1537.2 13 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_24h DE_24h-Neurod2_MA0668.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
Nr1H2 2 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
Nr2f6 3 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 419 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 315 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Pparg::Rxra 3 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_24h DE_24h-PpargRxra_MA0065.3 13 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
RXRA::VDR 2 datasets
Motif DE_12h DE_12h-RXRAVDR_MA0074.1 15 bp overlap
Motif DE_24h DE_24h-RXRAVDR_MA0074.1 15 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 439 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 579 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 290 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SPIB 2 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
THRB 3 datasets
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Motif DE_12h DE_12h-THRB_MA1574.2 13 bp overlap
Motif DE_24h DE_24h-THRB_MA1574.2 13 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif DE_24h DE_24h-TWIST1_MA1123.3 8 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZFP42 1 dataset
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_24h DE_24h-ZNF416_MA1979.2 10 bp overlap
ZNF418 2 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_24h DE_24h-ZNF418_MA1980.1 15 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif DE_24h DE_24h-ZNF449_MA1656.2 10 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap