chr2 : 107,311,487 107,312,307
820 bp 56 TFs 0 linked genes
This 820 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:107,306,487 – 107,317,307
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
Arid5a 1 dataset
Motif DE_60h DE_60h-Arid5a_MA0602.2 8 bp overlap
BRD4 3 datasets
ChIP CLB-Ga GSE133453.BRD4.CLB-Ga 336 bp overlap
ChIP CLB-Ga_Dinaciclib GSE133453.BRD4.CLB-Ga_Dinaciclib 406 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCFF669KMB 160 bp overlap
CHD4 2 datasets
ChIP 501-mel GSE134848.CHD4.501-mel 180 bp overlap
ChIP RH5 GSE155861.CHD4.RH5 359 bp overlap
CREB1 1 dataset
Motif DE_60h DE_60h-CREB1_MA0018.5 8 bp overlap
DMRTC2 1 dataset
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 92 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 195 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 754 bp overlap
ChIP DE DE-FOXA2-2 655 bp overlap
FOXJ3 1 dataset
ChIP SK-N-SH ENCFF124KVL 50 bp overlap
GATA2 2 datasets
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 295 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 58 bp overlap
GATA3 1 dataset
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 276 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 581 bp overlap
ChIP DE DE-GATA4-2 808 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 746 bp overlap
ChIP DE DE-GATA6-2 750 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 820 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 538 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 596 bp overlap
HEY2 1 dataset
Motif DE_60h DE_60h-HEY2_MA0649.2 9 bp overlap
HIF1A 1 dataset
Motif DE_60h DE_60h-HIF1A_MA1106.2 6 bp overlap
HNF1A 1 dataset
Motif DE_60h DE_60h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_60h DE_60h-HNF1B_MA0153.2 13 bp overlap
Hmga1 1 dataset
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
ICE1 1 dataset
ChIP HCT-116 GSE47938.ICE1.HCT-116 223 bp overlap
IRF2 1 dataset
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
IRF3 1 dataset
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 496 bp overlap
ChIP SK-N-SH ENCFF285GEQ 159 bp overlap
Irf1 1 dataset
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
KDM5B 1 dataset
ChIP SUM159 GSE46055.KDM5B.SUM159 115 bp overlap
LHX6 1 dataset
Motif DE_60h DE_60h-LHX6_MA0658.2 8 bp overlap
Lhx3 1 dataset
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 78 bp overlap
MYC 1 dataset
ChIP NB69 GSE138295.MYC.NB69 56 bp overlap
MYCN 7 datasets
ChIP CHP-134 GSE129588.MYCN.CHP-134 71 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 156 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 348 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 213 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 265 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 80 bp overlap
ChIP NGP GSE80151.MYCN.NGP 93 bp overlap
Nr2e1 1 dataset
Motif DE_60h DE_60h-Nr2e1_MA0676.1 9 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 567 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 600 bp overlap
RAD21 1 dataset
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 90 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 65 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 538 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 143 bp overlap
SMARCA4 9 datasets
ChIP NGP GSE134626.SMARCA4.NGP 204 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 60 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 173 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 66 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 375 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 180 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 291 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 207 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 227 bp overlap
SPI1 1 dataset
ChIP DC_LPS GSE123347.SPI1.DC_LPS 83 bp overlap
Stat2 1 dataset
Motif DE_60h DE_60h-Stat2_MA1623.2 10 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 246 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 321 bp overlap
ChIP BE2C GSE84389.TEAD4.BE2C 100 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 321 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 100 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 114 bp overlap
THRB 1 dataset
Motif DE_60h DE_60h-THRB_MA1576.2 18 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH ENCFF182EBB 51 bp overlap
VENTX 1 dataset
Motif DE_60h DE_60h-VENTX_MA0724.1 9 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
Zfp335 1 dataset
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap