chr1 : 35,554,954 35,555,177
223 bp 47 TFs 2 linked genes
This 223 bp open chromatin element is linked to KIAA0319L and NCDN and is bound by 47 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
KIAA0319L at TSS At TSS Proximity
NCDN 2.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:35,549,954 – 35,560,177
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
AR 1 dataset
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 223 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 223 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 223 bp overlap
ChIP H1 ENCFF399KAM 223 bp overlap
ATF2 2 datasets
ChIP H1 ENCFF295GZO 223 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 202 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 221 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 223 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 211 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 162 bp overlap
ChIP H1 ENCFF955PMP 218 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 149 bp overlap
CREB3L4 2 datasets
Motif DE_12h DE_12h-CREB3L4_MA1475.2 9 bp overlap
Motif DE_24h DE_24h-CREB3L4_MA1475.2 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 156 bp overlap
FOSL1::JUND 2 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1143.2 9 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 223 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 55 bp overlap
GATA1::TAL1 2 datasets
Motif DE_12h DE_12h-GATA1TAL1_MA0140.3 17 bp overlap
Motif DE_24h DE_24h-GATA1TAL1_MA0140.3 17 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 148 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 223 bp overlap
GFI1 1 dataset
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
GMEB2 2 datasets
Motif DE_12h DE_12h-GMEB2_MA0862.1 8 bp overlap
Motif DE_24h DE_24h-GMEB2_MA0862.1 8 bp overlap
JDP2 2 datasets
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
Motif DE_24h DE_24h-JDP2_MA0656.2 10 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 223 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 223 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 223 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 181 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 223 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 223 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 223 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 223 bp overlap
JUND 3 datasets
ChIP H1 ENCFF010YXS 218 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 153 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 115 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 131 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 76 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 223 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 223 bp overlap
ChIP hESC GSE18292.NANOG.hESC 109 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 216 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 223 bp overlap
ChIP H1 ENCFF566JSR 223 bp overlap
ChIP H1 ENCFF770YBQ 223 bp overlap
ChIP H1 ENCFF770YBQ 223 bp overlap
POU5F1 14 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 181 bp overlap
ChIP GM23338 ENCFF333SNB 223 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 223 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 223 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 223 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 136 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 138 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 223 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 197 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 222 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 223 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 223 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 223 bp overlap
RAD21 1 dataset
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 71 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
SCRT1 2 datasets
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
Motif DE_24h DE_24h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 223 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 100 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 190 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 134 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 217 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 223 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 223 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 223 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 223 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 223 bp overlap
SOX2 4 datasets
ChIP OSKM GSE81899.SOX2.OSKM 149 bp overlap
ChIP hESC GSE69479.SOX2.hESC 209 bp overlap
ChIP hESC GSE18292.SOX2.hESC 113 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 223 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 223 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 223 bp overlap
ChIP WTC11 ENCFF688PEU 223 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 223 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 214 bp overlap
TBP 5 datasets
ChIP H1 ENCFF859IIO 223 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 223 bp overlap
ChIP hESC GSE122298.TBP.hESC 223 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 67 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 223 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 177 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 223 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 223 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 117 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap