chr2 : 56,119,592 – 56,120,374
782 bp 53 TFs 0 linked genes
This 782 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:56,114,592 – 56,125,374
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 233 bp overlap
BRD4 1 dataset
ChIP hESC GSE33281.BRD4.hESC 109 bp overlap
CBFA2T3 1 dataset
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 221 bp overlap
CSDE1 1 dataset
ChIP K562 ENCFF313FYC 53 bp overlap
EGR1 7 datasets
ChIP H1 ENCFF451BLH 261 bp overlap
ChIP K-562 ENCSR211LTF.EGR1.K-562 281 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 534 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 232 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 121 bp overlap
ChIP K562 ENCFF006PJY 104 bp overlap
ChIP K562 ENCFF113OPQ 451 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
GMEB1 1 dataset
ChIP K562 ENCFF679VBB 325 bp overlap
HDAC2 1 dataset
ChIP K-562 ENCSR075HTM.HDAC2.K-562 324 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 286 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
IKZF1 4 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 505 bp overlap
ChIP K562 ENCFF348IBL 117 bp overlap
ChIP K562 ENCFF771OHZ 496 bp overlap
ChIP K562 ENCFF771OHZ 497 bp overlap
JUN 1 dataset
ChIP HUES-8 GSE109524.JUN.HUES-8 323 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 529 bp overlap
ChIP K562 ENCFF320EQC 516 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap
MITF 2 datasets
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 268 bp overlap
ChIP K562 ENCFF731XJJ 425 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 164 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 506 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 186 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 344 bp overlap
ChIP hESC GSE18292.NANOG.hESC 109 bp overlap
NFATC3 3 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NFKB1 2 datasets
Motif ES_0h ES_0h-NFKB1_MA0105.4 13 bp overlap
ChIP L1236 GSE63736.NFKB1.L1236 98 bp overlap
NFKB2 1 dataset
Motif ES_0h ES_0h-NFKB2_MA0778.2 11 bp overlap
NRF1 2 datasets
ChIP K-562 ENCSR837EYC.NRF1.K-562 129 bp overlap
ChIP K562 ENCFF130SGK 411 bp overlap
Nfatc1 3 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F2 1 dataset
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 430 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 246 bp overlap
ChIP K562 ENCFF196WTG 556 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
Motif ES_0h ES_0h-RELA_MA0107.1 10 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 175 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 377 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 160 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 288 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 285 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 328 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 176 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 103 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 213 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 269 bp overlap
SPI1 9 datasets
ChIP HL-60 ENCFF645GBT 120 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 85 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 75 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 178 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 92 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 176 bp overlap
ChIP K-562_SAHA GSE74999.SPI1.K-562_SAHA 65 bp overlap
ChIP K562 ENCFF410ORC 72 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 166 bp overlap
TCF12 1 dataset
ChIP K-562 ENCSR744WOO.TCF12.K-562 201 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 451 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 218 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 427 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF407 4 datasets
ChIP K-562 ENCSR011NOZ.ZNF407.K-562 158 bp overlap
ChIP K-562 ENCSR439OCL.ZNF407.K-562 135 bp overlap
ChIP K562 ENCFF568QZW 173 bp overlap
ChIP K562 ENCFF893ASX 136 bp overlap
ZNF652 2 datasets
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact