chr2:44,928,034–44,928,446

chr2 : 44,928,034 – 44,928,446

412 bp 54 TFs 5 linked genes

This 412 bp open chromatin element is linked to 5 target genes and is bound by 54 transcription factors.

Linked Genes

5 genes

Gene	Expression	Dist. to TSS	Distance	Link type
ENSG00000278957		at TSS	At TSS	Proximity
ENSG00000276229		6.8 kb	Proximal	Proximity
ENSG00000277809		7.1 kb	Proximal	Proximity
LINC01833		7.4 kb	Proximal	Proximity
ENSG00000276048		9.0 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

54 transcription factors

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 312 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 412 bp overlap

ChIP H1 ENCFF399KAM 61 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 363 bp overlap

ChIP WA01 ENCSR000BQU.ATF2.WA01 190 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 292 bp overlap

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 203 bp overlap

BRD4 3 datasets

ChIP COLO-741 GSE73319.BRD4.COLO-741 326 bp overlap

ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 63 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 397 bp overlap

ChIP HepG2 ENCFF838BNI 244 bp overlap

ChIP H1 ENCFF095JHA 412 bp overlap

ChIP HCT-116 GSE72622.CDK9.HCT-116 166 bp overlap

CHD1 2 datasets

ChIP WA01 ENCSR000AQK.CHD1.WA01 325 bp overlap

ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 259 bp overlap

ChIP WA01 ENCSR000AVA.CHD7.WA01 162 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 272 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF274GAT 336 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 412 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 307 bp overlap

ChIP ProEs GSE59087.EED.ProEs 225 bp overlap

ChIP A-549 GSE122203.ELF1.A-549 136 bp overlap

EZH2 25 datasets

ChIP A673 ENCFF790MVL 412 bp overlap

ChIP A673 ENCFF955JRZ 412 bp overlap

ChIP B-cell ENCSR000AUZ.EZH2.B-cell 299 bp overlap

ChIP GM12878 ENCFF635TDF 291 bp overlap

ChIP GM23248 ENCFF404ZHM 412 bp overlap

ChIP GM23248 ENCFF404ZHM 295 bp overlap

ChIP GM23338 ENCFF613YON 128 bp overlap

ChIP H1 ENCFF232NZA 412 bp overlap

ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 412 bp overlap

ChIP THP-1 GSE135024.EZH2.THP-1 412 bp overlap

ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 412 bp overlap

ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 216 bp overlap

ChIP astrocyte ENCFF365JTP 412 bp overlap

ChIP dermal-fibroblast_Preneoplastic GSE126396.EZH2.dermal-fibroblast_Preneoplastic 262 bp overlap

ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 412 bp overlap

ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 412 bp overlap

ChIP endothelial cell of umbilical vein ENCFF539AKL 412 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 412 bp overlap

ChIP fibroblast of lung ENCFF479BAW 412 bp overlap

ChIP hepatocyte ENCFF552DZB 412 bp overlap

ChIP keratinocyte ENCFF070STK 309 bp overlap

ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 342 bp overlap

ChIP neural progenitor cell ENCFF018MKA 66 bp overlap

ChIP neural progenitor cell ENCFF018MKA 66 bp overlap

ChIP neural progenitor cell ENCFF472NFV 412 bp overlap

EZH2_phosphoT487 1 dataset

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 374 bp overlap

FOXA2 2 datasets

ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 185 bp overlap

ChIP DE DE-FOXA2-1 79 bp overlap

GABPA 1 dataset

ChIP WA01 ENCSR000BIW.GABPA.WA01 200 bp overlap

GATA2 1 dataset

ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 242 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 387 bp overlap

INO80 1 dataset

ChIP Huh-7 GSE97411.INO80.Huh-7 412 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 300 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 412 bp overlap

ChIP MCF-7_DMSO GSE157385.JUN.MCF-7_DMSO 274 bp overlap

KDM5B 2 datasets

ChIP HCC2157 GSE46055.KDM5B.HCC2157 161 bp overlap

ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 115 bp overlap

MYCN 2 datasets

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 260 bp overlap

ChIP NB-1643 GSE138295.MYCN.NB-1643 382 bp overlap

NANOG 2 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 256 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 168 bp overlap

OGG1 4 datasets

ChIP HEK293 GSE89017.OGG1.HEK293 263 bp overlap

ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 243 bp overlap

ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 209 bp overlap

ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 88 bp overlap

PCGF2 1 dataset

ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 350 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 235 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 371 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 335 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 368 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 173 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 412 bp overlap

RBM39 3 datasets

ChIP Hep-G2 GSE120104.RBM39.Hep-G2 95 bp overlap

ChIP Hep-G2 ENCSR339JTP.RBM39.Hep-G2 76 bp overlap

ChIP HepG2 ENCFF084YZE 337 bp overlap

ChIP SGBS GSE64233.RELA.SGBS 190 bp overlap

RNF2 2 datasets

ChIP H1 ENCFF239FFS 412 bp overlap

ChIP H1 ENCFF239FFS 412 bp overlap

SALL3 1 dataset

ChIP hiPSC GSE104863.SALL3.hiPSC 217 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 170 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 64 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 295 bp overlap

SMARCA4 1 dataset

ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 166 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 250 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 273 bp overlap

ChIP WA01 ENCSR000BQV.SP4.WA01 168 bp overlap

SREBP2 1 dataset

ChIP HCC70 GSE126380.SREBP2.HCC70 261 bp overlap

SRSF3 1 dataset

ChIP K-562 GSE120104.SRSF3.K-562 268 bp overlap

ChIP Aska-SS GSE108025.SS18.Aska-SS 259 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 150 bp overlap

SUZ12 6 datasets

ChIP GM12878 ENCFF498QAM 188 bp overlap

ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 412 bp overlap

ChIP H1 ENCFF881NFR 412 bp overlap

ChIP K-562 ENCSR000AUC.SUZ12.K-562 327 bp overlap

ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 406 bp overlap

ChIP WA01 ENCSR000EUQ.SUZ12.WA01 289 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 183 bp overlap

ChIP Jurkat_NCKD GSE85524.TET2.Jurkat_NCKD 205 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 229 bp overlap

ZBTB7A 1 dataset

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 91 bp overlap