Predicted to be involved in regulation of gene expression. [provided by Alliance of Genome Resources, Jul 2025]
Transcription factors with Perturb-seq knockdown data for LINC01833. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = LINC01833 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of LINC01833, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr2:44,361,086–44,362,690 | 574.0 kb | Distal (>10kb) Multiome HiCAR | 985 | |
| chr2:44,674,098–44,675,273 | 261.0 kb | Distal (>10kb) Multiome | 276 | |
| chr2:44,768,426–44,769,321 | 166.9 kb | Distal (>10kb) Multiome HiCAR | 118 | |
| chr2:44,778,216–44,779,112 | 157.2 kb | Distal (>10kb) Multiome HiCAR | 285 | |
| chr2:44,789,787–44,791,030 | 145.3 kb | Distal (>10kb) Multiome HiCAR | 179 | |
| chr2:44,801,102–44,802,191 | 134.3 kb | Distal (>10kb) Multiome HiCAR | 262 | |
| chr2:44,802,563–44,803,392 | 132.8 kb | Distal (>10kb) Multiome HiCAR | 292 | |
| chr2:44,804,663–44,806,066 | 130.4 kb | Distal (>10kb) Multiome HiCAR | 247 | |
| chr2:44,881,511–44,882,032 | 54.0 kb | Distal (>10kb) Multiome | 68 | |
| chr2:44,925,120–44,926,259 | 10.1 kb | Distal (>10kb) Multiome | 76 | |
| chr2:44,928,034–44,928,446 | 7.4 kb | Proximal (<10kb) | 54 | |
| chr2:44,928,632–44,930,007 | 6.4 kb | Proximal (<10kb) Multiome | 186 | |
| chr2:44,930,118–44,930,479 | 5.3 kb | Proximal (<10kb) | 64 | |
| chr2:44,932,798–44,933,373 | 2.4 kb | Proximal (<10kb) | 62 | |
| chr2:44,934,122–44,936,090 | 57 bp | At TSS Multiome | 246 | |
| chr2:44,937,044–44,939,675 | 1.9 kb | Proximal (<10kb) Multiome | 512 | |
| chr2:44,939,777–44,940,009 | 4.0 kb | Proximal (<10kb) | 43 | |
| chr2:44,940,953–44,942,676 | 5.9 kb | Proximal (<10kb) Multiome | 260 | |
| chr2:44,943,778–44,944,903 | 8.0 kb | Proximal (<10kb) | 119 | |
| chr2:44,945,722–44,946,385 | 10.3 kb | Distal (>10kb) Multiome | 150 | |
| chr2:44,949,379–44,950,322 | 14.1 kb | Distal (>10kb) Multiome | 186 | |
| chr2:44,951,821–44,953,211 | 16.6 kb | Distal (>10kb) Multiome | 430 | |
| chr2:44,955,189–44,956,345 | 20.0 kb | Distal (>10kb) Multiome | 554 | |
| chr2:45,000,269–45,001,482 | 64.9 kb | Distal (>10kb) Multiome | 111 | |
| chr2:45,008,227–45,010,649 | 73.8 kb | Distal (>10kb) Multiome | 554 | |
| chr2:45,013,210–45,014,745 | 78.4 kb | Distal (>10kb) Multiome | 393 | |
| chr2:45,068,171–45,068,872 | 132.7 kb | Distal (>10kb) Multiome | 85 | |
| chr2:45,168,959–45,170,811 | 234.2 kb | Distal (>10kb) Multiome | 356 |
Genomic view of the LINC01833 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.