chrX : 140,505,441 140,505,678
237 bp 46 TFs 1 linked gene
This 237 bp open chromatin element is linked to SOX3 and is bound by 46 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SOX3 372 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:140,500,441 – 140,510,678
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
46 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 216 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 130 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 196 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 237 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 193 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD1 GSE138084.BRD2.THP-1_iBET-BD1 83 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 166 bp overlap
ChIP MCF-7_E2 GSE55921.BRD4.MCF-7_E2 196 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 237 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 118 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 171 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 173 bp overlap
ESR1 4 datasets
ChIP MCF-7_E2 GSE117941.ESR1.MCF-7_E2 153 bp overlap
ChIP MCF-7_H3B-5942 GSE115607.ESR1.MCF-7_H3B-5942 135 bp overlap
ChIP MCF-7_H3B-6545 GSE115607.ESR1.MCF-7_H3B-6545 129 bp overlap
ChIP MCF-7_Veh GSE117941.ESR1.MCF-7_Veh 177 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 218 bp overlap
EZH2 14 datasets
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 54 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 188 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 149 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 222 bp overlap
ChIP T98G GSE112240.EZH2.T98G 122 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 220 bp overlap
ChIP astrocyte ENCFF365JTP 225 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 169 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 187 bp overlap
ChIP hepatocyte ENCFF118DKH 93 bp overlap
ChIP hepatocyte ENCFF552DZB 174 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 172 bp overlap
ChIP neural progenitor cell ENCFF018MKA 120 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 106 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 138 bp overlap
GLIS2 1 dataset
ChIP HEK293 ENCSR535DIA.GLIS2.HEK293 170 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 237 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 237 bp overlap
JARID2 1 dataset
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 102 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 228 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 211 bp overlap
MYC-DAXX 1 dataset
ChIP HEK293_GAL4-DBD GSE107348.MYC-DAXX.HEK293_GAL4-DBD 123 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 185 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 237 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 227 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 178 bp overlap
RAD21 2 datasets
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 235 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 237 bp overlap
RBBP5 3 datasets
ChIP H1 ENCFF905HFL 237 bp overlap
ChIP H1 ENCFF905HFL 217 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 221 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 85 bp overlap
RNF2 2 datasets
ChIP SYO-1_shRING1A-B GSE139053.RNF2.SYO-1_shRING1A-B 237 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 73 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 237 bp overlap
RYBP 1 dataset
ChIP HEK293T GSE34774.RYBP.HEK293T 137 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 134 bp overlap
SMARCA4 2 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 237 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 185 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 152 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 156 bp overlap
SUZ12 4 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 237 bp overlap
ChIP LNCaP GSE39459.SUZ12.LNCaP 237 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 125 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 208 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 122 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 123 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 237 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 127 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 195 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 192 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 74 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 73 bp overlap
ZBTB26 1 dataset
ChIP HEK293 ENCFF752TCU 66 bp overlap
ZBTB48 3 datasets
ChIP HEK293 ENCFF809BPK 237 bp overlap
ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 174 bp overlap
ChIP U2OS GSE96776.ZBTB48.U2OS 138 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 134 bp overlap
ZNF213 1 dataset
Motif ES_0h ES_0h-ZNF213_MA2121.1 12 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 237 bp overlap