chrX : 100,791,389 – 100,792,153

764 bp 74 TFs 4 linked genes

This 764 bp open chromatin element is linked to 4 target genes and is bound by 74 transcription factors.

Linked Genes

4 genes

Gene	Dist. to TSS	Distance	Link type
CSTF2	28.6 kb	Distal	Multiome
SYTL4	60.3 kb	Distal	Multiome
TSPAN6	155.0 kb	Distal	Multiome
TRMT2B	260.3 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

74 transcription factors

ARNT::HIF1A 1 dataset

Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

BCL11A 2 datasets

Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap

Motif DE_24h DE_24h-BCL11A_MA2324.1 7 bp overlap

BRD4 1 dataset

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 111 bp overlap

CEBPA 2 datasets

Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap

Motif DE_36h DE_36h-CEBPA_MA0102.5 10 bp overlap

CEBPD 2 datasets

Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap

Motif DE_36h DE_36h-CEBPD_MA0836.3 8 bp overlap

EHF 2 datasets

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

Motif DE_24h DE_24h-EHF_MA0598.4 9 bp overlap

ELF1 2 datasets

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

Motif DE_24h DE_24h-ELF1_MA0473.4 9 bp overlap

ELF2 2 datasets

Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap

Motif DE_24h DE_24h-ELF2_MA1483.3 10 bp overlap

ELF3 2 datasets

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

Motif DE_24h DE_24h-ELF3_MA0640.3 9 bp overlap

ELF4 2 datasets

Motif DE_12h DE_12h-ELF4_MA0641.1 12 bp overlap

Motif DE_24h DE_24h-ELF4_MA0641.1 12 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 243 bp overlap

ETV1 2 datasets

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

Motif DE_24h DE_24h-ETV1_MA0761.3 9 bp overlap

Elf5 2 datasets

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap

Erg 2 datasets

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

Motif DE_24h DE_24h-Erg_MA0474.4 10 bp overlap

GABPA 2 datasets

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

Motif DE_24h DE_24h-GABPA_MA0062.4 10 bp overlap

GATA6 5 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 354 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 297 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 452 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 336 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 331 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HIF1A 1 dataset

Motif DE_12h DE_12h-HIF1A_MA1106.2 6 bp overlap

HOXB13 2 datasets

Motif DE_12h DE_12h-HOXB13_MA0901.3 9 bp overlap

Motif DE_48h DE_48h-HOXB13_MA0901.3 9 bp overlap

Hoxa13 2 datasets

Motif DE_12h DE_12h-Hoxa13_MA0650.4 8 bp overlap

Motif DE_48h DE_48h-Hoxa13_MA0650.4 8 bp overlap

IKZF2 2 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap

INSM1 2 datasets

Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap

Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap

Ikzf3 2 datasets

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

Motif DE_24h DE_24h-Ikzf3_MA1992.2 9 bp overlap

JUN 2 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 426 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 323 bp overlap

KLF1 2 datasets

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap

KLF10 2 datasets

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap

KLF14 2 datasets

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap

KLF16 2 datasets

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap

KLF2 2 datasets

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap

KLF4 2 datasets

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap

KLF5 2 datasets

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap

KLF9 2 datasets

Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap

Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 135 bp overlap

MEIS1 1 dataset

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MYB 1 dataset

Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 324 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

NFATC3 2 datasets

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap

NFATC4 2 datasets

Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap

Motif DE_48h DE_48h-NFATC4_MA1525.3 9 bp overlap

NR1I2 2 datasets

Motif DE_12h DE_12h-NR1I2_MA1533.2 15 bp overlap

Motif DE_24h DE_24h-NR1I2_MA1533.2 15 bp overlap

NR1I3 2 datasets

Motif DE_12h DE_12h-NR1I3_MA1534.2 8 bp overlap

Motif DE_24h DE_24h-NR1I3_MA1534.2 8 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap

NR2F1 2 datasets

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Motif DE_36h DE_36h-NR2F1_MA0017.3 12 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

Nfat5 2 datasets

Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap

Motif DE_48h DE_48h-Nfat5_MA0606.3 8 bp overlap

Nfatc1 2 datasets

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap

Nfatc2 2 datasets

Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap

Motif DE_48h DE_48h-Nfatc2_MA0152.3 8 bp overlap

Nr2F6 2 datasets

Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap

Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap

OSR2 2 datasets

Motif DE_12h DE_12h-OSR2_MA1646.2 8 bp overlap

Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap

PATZ1 2 datasets

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 517 bp overlap

Rarb 2 datasets

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Motif DE_36h DE_36h-Rarb_MA0857.1 16 bp overlap

Rarg 2 datasets

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

Motif DE_36h DE_36h-Rarg_MA0859.2 15 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 423 bp overlap

SMAD2_3 3 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 440 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 366 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 258 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 409 bp overlap

SP3 2 datasets

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

Motif DE_48h DE_48h-SP3_MA0746.3 11 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

TBP 2 datasets

Motif DE_12h DE_12h-TBP_MA0108.3 7 bp overlap

Motif DE_48h DE_48h-TBP_MA0108.3 7 bp overlap

TFAP4::FLI1 1 dataset

Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap

TWIST1 1 dataset

Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap

Wt1 2 datasets

Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap

Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap

ZBTB7C 1 dataset

Motif DE_12h DE_12h-ZBTB7C_MA0695.2 8 bp overlap

ZIC4 1 dataset

Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap

ZKSCAN1 1 dataset

Motif DE_12h DE_12h-ZKSCAN1_MA1585.2 9 bp overlap

ZKSCAN5 1 dataset

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF175 2 datasets

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

Motif DE_24h DE_24h-ZNF175_MA2332.1 9 bp overlap

ZNF281 1 dataset

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF418 1 dataset

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

ZNF449 1 dataset

Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap

ZNF454 1 dataset

Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap

ZNF784 2 datasets

Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap

Motif DE_48h DE_48h-ZNF784_MA1717.2 8 bp overlap