chr1 : 29,186,756 29,187,081
325 bp 78 TFs 1 linked gene
This 325 bp open chromatin element is linked to SRSF4 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SRSF4 4.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:29,181,756 – 29,192,081
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP RMG-I GSE104545.ARID1A.RMG-I 128 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 136 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 254 bp overlap
ASH2L 2 datasets
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 149 bp overlap
ChIP HepG2 ENCFF207QHL 220 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 168 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 152 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 325 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 325 bp overlap
CTCF 1 dataset
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 325 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 244 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 169 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 308 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 258 bp overlap
GFI1 1 dataset
ChIP HepG2 ENCFF472INF 325 bp overlap
GMEB1 2 datasets
ChIP HepG2 ENCFF434UDC 213 bp overlap
ChIP HepG2 ENCFF434UDC 325 bp overlap
Hic1 1 dataset
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
JUN 4 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 301 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 316 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 289 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 318 bp overlap
KDM1A 2 datasets
ChIP H1 ENCFF696SGD 159 bp overlap
ChIP HepG2 ENCFF240UWG 182 bp overlap
MCRS1 2 datasets
ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 134 bp overlap
ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 134 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 212 bp overlap
ChIP H1 ENCFF747ZPQ 224 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 325 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 269 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 198 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 325 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 325 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 325 bp overlap
ChIP hESC GSE18292.NANOG.hESC 147 bp overlap
NCAPH2 1 dataset
ChIP RMG-I GSE120058.NCAPH2.RMG-I 111 bp overlap
NFIB 1 dataset
ChIP HepG2 ENCFF312WRP 110 bp overlap
PGR 3 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 191 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 189 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 137 bp overlap
PHF5A 1 dataset
ChIP HepG2 ENCFF054OSA 142 bp overlap
POGZ 1 dataset
ChIP HepG2 ENCFF153UUK 73 bp overlap
POU5F1 8 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 325 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 178 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 325 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 187 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 276 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 325 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 325 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 306 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 115 bp overlap
PRMT3 1 dataset
ChIP HepG2 ENCFF257VCG 271 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 96 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 194 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 88 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 271 bp overlap
SKI 1 dataset
ChIP HepG2 ENCFF631IPX 55 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 261 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 315 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 199 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 293 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 281 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 325 bp overlap
SMARCA4 3 datasets
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 296 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 325 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 325 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 285 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 325 bp overlap
SMARCC1 3 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 143 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 325 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 325 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 325 bp overlap
SOX6 1 dataset
ChIP HepG2 ENCFF767OCK 165 bp overlap
SP1 1 dataset
ChIP WTC11 ENCFF688PEU 313 bp overlap
SP4 1 dataset
ChIP HepG2 ENCFF865DSQ 53 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 187 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 145 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 258 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 181 bp overlap
TBP 2 datasets
ChIP hESC GSE122298.TBP.hESC 132 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 266 bp overlap
TBX5 1 dataset
ChIP hiPSC GSE81585.TBX5.hiPSC 225 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 143 bp overlap
ChIP ESC S26-ESC-d0-TEAD4-exp1 258 bp overlap
ChIP T-47D_Veh GSE125594.TEAD4.T-47D_Veh 267 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 147 bp overlap
YY1 2 datasets
ChIP Huh-7 GSE97411.YY1.Huh-7 325 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 165 bp overlap
YY1AP1 1 dataset
ChIP T-47D_E2 GSE125594.YY1AP1.T-47D_E2 61 bp overlap
ZBTB12 1 dataset
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
ZBTB25 1 dataset
ChIP HepG2 ENCFF648SDH 274 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 78 bp overlap
ZFHX3 1 dataset
ChIP HepG2 ENCFF082SJV 115 bp overlap
ZFX 1 dataset
ChIP HEK293T ENCFF402JZW 264 bp overlap
ZMYM2 1 dataset
ChIP HepG2 ENCFF575OMW 157 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 228 bp overlap
ZNF143 2 datasets
ChIP WA01 ENCSR000EBW.ZNF143.WA01 109 bp overlap
ChIP WA09_heat-shock GSE105028.ZNF143.WA09_heat-shock 230 bp overlap
ZNF3 1 dataset
ChIP Hep-G2 ENCSR182QWU.ZNF3.Hep-G2 154 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ChIP HepG2 ENCFF018ISP 116 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 233 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 206 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 325 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF749 1 dataset
ChIP HepG2 ENCFF992SKL 54 bp overlap
ZNF768 1 dataset
ChIP HepG2 ENCFF388QCK 194 bp overlap
ZNF841 1 dataset
ChIP HepG2 ENCFF252MVQ 214 bp overlap
ZNF878 1 dataset
ChIP HepG2 ENCFF165VOD 241 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap