chr2 : 19,353,395 – 19,353,782
387 bp 48 TFs 3 linked genes
This 387 bp open chromatin element is linked to OSR1, MIR4757, and LINC01376 and is bound by 48 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
OSR1 4.8 kb Proximal Proximity
MIR4757 5.0 kb Proximal Proximity
LINC01376 5.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:19,348,395 – 19,358,782
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
AR 2 datasets
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 179 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 105 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 387 bp overlap
BCOR 1 dataset
ChIP WA01 GSE104690.BCOR.WA01 387 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 275 bp overlap
BRD4 4 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 179 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 80 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 353 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 351 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 266 bp overlap
CHD2 2 datasets
ChIP H1 ENCFF991MKH 192 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 146 bp overlap
CTCF 95 datasets
ChIP AG09319 ENCFF401ZTN 231 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 247 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 201 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 162 bp overlap
ChIP GM23338 ENCFF531QOI 168 bp overlap
ChIP GM23338 ENCFF531QOI 320 bp overlap
ChIP GM23338 ENCFF772DML 189 bp overlap
ChIP H1 ENCFF414GZI 188 bp overlap
ChIP H1 ENCFF764RHO 256 bp overlap
ChIP H9 ENCFF152GTF 328 bp overlap
ChIP H9 ENCFF152GTF 321 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 103 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 233 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 131 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 177 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 159 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 174 bp overlap
ChIP SK-N-SH ENCFF575DMG 153 bp overlap
ChIP SK-N-SH ENCFF731NJX 220 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 191 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 328 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 134 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 151 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 153 bp overlap
ChIP WA01_MESEN_STEM GSE52457.CTCF.WA01_MESEN_STEM 175 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 163 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 387 bp overlap
ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 206 bp overlap
ChIP ascending aorta ENCFF451CCT 302 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 173 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 255 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 185 bp overlap
ChIP astrocyte_spinal_cord ENCSR000DSU.CTCF.astrocyte_spinal_cord 172 bp overlap
ChIP body of pancreas ENCFF269EDN 298 bp overlap
ChIP body of pancreas ENCFF881RGF 255 bp overlap
ChIP brain microvascular endothelial cell ENCFF526VHE 240 bp overlap
ChIP chondrocyte ENCFF134ORZ 324 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 236 bp overlap
ChIP choroid-plexus_epithelial ENCSR000DTL.CTCF.choroid-plexus_epithelial 183 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 311 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 248 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 209 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 157 bp overlap
ChIP endodermal cell ENCFF471YCZ 293 bp overlap
ChIP endothelial cell of umbilical vein ENCFF677IZD 248 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 280 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DVP.CTCF.endothelial_umbilical-vein 141 bp overlap
ChIP esophagus muscularis mucosa ENCFF534UGM 304 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 237 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 299 bp overlap
ChIP fibroblast_AORTIC_ADVENTITIA ENCSR000DPY.CTCF.fibroblast_AORTIC_ADVENTITIA 163 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 336 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 162 bp overlap
ChIP gastroesophageal sphincter ENCFF918KPI 245 bp overlap
ChIP gastroesophageal-sphincter ENCSR186NVR.CTCF.gastroesophageal-sphincter 141 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 285 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 185 bp overlap
ChIP gastroesophageal-sphincter ENCSR661XNQ.CTCF.gastroesophageal-sphincter 183 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 180 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 378 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 185 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 165 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 134 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 131 bp overlap
ChIP keratinocyte ENCFF046PBT 185 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCFF667ULX 288 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 387 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 278 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 208 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 115 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 337 bp overlap
ChIP neural progenitor cell ENCFF420RBO 163 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 303 bp overlap
ChIP neuroblastoma GSE115862.CTCF.neuroblastoma 224 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 94 bp overlap
ChIP pancreas_body ENCSR572DUJ.CTCF.pancreas_body 183 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 303 bp overlap
ChIP pancreas_body ENCSR307PFP.CTCF.pancreas_body 218 bp overlap
ChIP pancreas_body ENCSR408XTO.CTCF.pancreas_body 179 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 187 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 200 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 180 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 170 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 306 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 336 bp overlap
ChIP right lobe of liver ENCFF011NDG 284 bp overlap
ChIP right lobe of liver ENCFF250KSY 324 bp overlap
ChIP thoracic aorta ENCFF166PKA 293 bp overlap
ChIP thyroid gland ENCFF300RYK 313 bp overlap
ChIP thyroid gland ENCFF631QRY 331 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 201 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 192 bp overlap
ChIP tibial artery ENCFF882IXS 372 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 365 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 265 bp overlap
ESR1 3 datasets
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 159 bp overlap
ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 248 bp overlap
ChIP MDA-MB-231_LQ_45min GSE95121.ESR1.MDA-MB-231_LQ_45min 364 bp overlap
EZH2 17 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 364 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 341 bp overlap
ChIP GM23338 ENCFF613YON 387 bp overlap
ChIP GM23338 ENCFF886DXX 125 bp overlap
ChIP H1 ENCFF232NZA 387 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 334 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 362 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 274 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 387 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 237 bp overlap
ChIP astrocyte ENCFF365JTP 200 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 387 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 151 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 387 bp overlap
ChIP neural cell ENCFF610EPB 152 bp overlap
ChIP neural progenitor cell ENCFF018MKA 387 bp overlap
ChIP neural progenitor cell ENCFF472NFV 387 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 236 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 134 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 191 bp overlap
HNRNPL 1 dataset
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 206 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 78 bp overlap
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 85 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 387 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 346 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 151 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 358 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 348 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 328 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 161 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 77 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 197 bp overlap
MYCN 1 dataset
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 255 bp overlap
NR4A1 1 dataset
ChIP K-562 ENCSR692RET.NR4A1.K-562 320 bp overlap
OGG1 1 dataset
ChIP HEK293 GSE89017.OGG1.HEK293 253 bp overlap
POU2F1 1 dataset
ChIP T-47D GSE148277.POU2F1.T-47D 251 bp overlap
POU5F1 1 dataset
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 256 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 357 bp overlap
PTBP1 1 dataset
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 170 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF698EWO 229 bp overlap
ChIP H1 ENCFF967OJF 198 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 382 bp overlap
RNF2 5 datasets
ChIP H1 ENCFF239FFS 122 bp overlap
ChIP H1 ENCFF239FFS 250 bp overlap
ChIP H1 ENCFF239FFS 228 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 255 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 387 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 107 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 387 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 112 bp overlap
ChIP SYO-1 GSE108025.SMARCC1.SYO-1 90 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 353 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 275 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 265 bp overlap
SREBF2 1 dataset
ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 220 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 356 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 333 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 132 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 160 bp overlap
SUZ12 7 datasets
ChIP H1 ENCFF507HGF 271 bp overlap
ChIP H1 ENCFF881NFR 387 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 159 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 57 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 152 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 387 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 357 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 363 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 387 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 255 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 97 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 213 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 387 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 368 bp overlap
ZNF3 1 dataset
ChIP K-562 ENCSR195QFV.ZNF3.K-562 160 bp overlap
ZNF57 1 dataset
ChIP BG01V GSE97403.ZNF57.BG01V 223 bp overlap
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