chr2 : 16,166,585 16,166,936
351 bp 68 TFs 0 linked genes
This 351 bp open chromatin element has no linked target genes and is bound by 68 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:16,161,585 – 16,171,936
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 302 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
BARX1 1 dataset
Motif DE_12h DE_12h-BARX1_MA0875.2 6 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 167 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 314 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 115 bp overlap
BRD4 3 datasets
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 313 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 61 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 351 bp overlap
BSX 1 dataset
Motif DE_12h DE_12h-BSX_MA0876.2 6 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 351 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 144 bp overlap
CTCF 32 datasets
ChIP H9 ENCFF152GTF 123 bp overlap
ChIP HAP1 GSE152721.CTCF.HAP1 349 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 267 bp overlap
ChIP HAP1_2kb GSE152721.CTCF.HAP1_2kb 265 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 291 bp overlap
ChIP HAP1_WaplKO-33 GSE94992.CTCF.HAP1_WaplKO-33 170 bp overlap
ChIP HAP1_WaplKO-33_SCC4KO GSE94992.CTCF.HAP1_WaplKO-33_SCC4KO 168 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 310 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 275 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 270 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 224 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 268 bp overlap
ChIP HAP1_clone25 GSE152721.CTCF.HAP1_clone25 192 bp overlap
ChIP Hep-G2 ENCSR000DUG.CTCF.Hep-G2 161 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 170 bp overlap
ChIP brain ENCFF685VRG 351 bp overlap
ChIP brain ENCFF685VRG 199 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 152 bp overlap
ChIP endodermal cell ENCFF471YCZ 302 bp overlap
ChIP endodermal cell ENCFF471YCZ 102 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 233 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 113 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 121 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 118 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 289 bp overlap
ChIP neural progenitor cell ENCFF581WPG 156 bp overlap
ChIP neural progenitor cell ENCFF581WPG 185 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 268 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 263 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 214 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 330 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 300 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 67 bp overlap
DLX1 1 dataset
Motif DE_12h DE_12h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_12h DE_12h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_12h DE_12h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_12h DE_12h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_12h DE_12h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_12h DE_12h-Dlx5_MA1476.3 8 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 223 bp overlap
EZH2 4 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 186 bp overlap
ChIP PC-9 ENCSR793USK.EZH2.PC-9 351 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 351 bp overlap
ChIP neural progenitor cell ENCFF018MKA 286 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 197 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 287 bp overlap
ChIP DE DE-FOXA2-2 351 bp overlap
FOXS1 1 dataset
Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap
GATA3 1 dataset
ChIP Kelly GSE94822.GATA3.Kelly 271 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 247 bp overlap
ChIP DE DE-GATA4-2 319 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 279 bp overlap
ChIP DE DE-GATA6-2 296 bp overlap
GBX2 1 dataset
Motif DE_12h DE_12h-GBX2_MA0890.2 6 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 155 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 148 bp overlap
HESX1 1 dataset
Motif DE_12h DE_12h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_12h DE_12h-HOXA7_MA1498.3 6 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 351 bp overlap
LBX2 1 dataset
Motif DE_12h DE_12h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_12h DE_12h-LHX2_MA0700.3 6 bp overlap
MSX1 1 dataset
Motif DE_12h DE_12h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_12h DE_12h-MSX2_MA0708.3 6 bp overlap
MYC 1 dataset
ChIP Kelly GSE138295.MYC.Kelly 351 bp overlap
MYCN 2 datasets
ChIP Kelly GSE94782.MYCN.Kelly 144 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 206 bp overlap
Msx3 1 dataset
Motif DE_12h DE_12h-Msx3_MA0709.2 6 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 351 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 306 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 278 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 351 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 301 bp overlap
ChIP hESC GSE20650.NANOG.hESC 245 bp overlap
Nobox 1 dataset
Motif DE_12h DE_12h-Nobox_MA0125.2 6 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 199 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 230 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 351 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 66 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 292 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 192 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 351 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 215 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 351 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 304 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 305 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 290 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 244 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 185 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 262 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 310 bp overlap
RAX 1 dataset
Motif DE_12h DE_12h-RAX_MA0718.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 347 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 351 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 351 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 351 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 351 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 326 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 215 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 314 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 228 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SOX14 1 dataset
Motif DE_12h DE_12h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 135 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
SOX18 1 dataset
Motif DE_12h DE_12h-SOX18_MA1563.2 8 bp overlap
SOX2 9 datasets
ChIP H9 GSE46837.SOX2.H9 230 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 351 bp overlap
ChIP NPC GSE122631.SOX2.NPC 351 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 249 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 351 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 351 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 332 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 351 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 351 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 327 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 316 bp overlap
STAT1 1 dataset
ChIP CD14_LPS GSE43036.STAT1.CD14_LPS 151 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 252 bp overlap
SUZ12 1 dataset
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 343 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 198 bp overlap
TEAD4 1 dataset
ChIP H1 ENCFF778PAX 245 bp overlap
TP53 1 dataset
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 203 bp overlap
VENTX 1 dataset
Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap
YY1 3 datasets
ChIP H1 ENCFF524BTL 267 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 164 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 186 bp overlap