chr19 : 31,353,950 31,354,273
323 bp 44 TFs 2 linked genes
This 323 bp open chromatin element is linked to TSHZ3 and TSHZ3-AS1 and is bound by 44 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
TSHZ3 4.5 kb Proximal Proximity
TSHZ3-AS1 5.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:31,348,950 – 31,359,273
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
44 transcription factors
Source
Cell type
AR 8 datasets
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 142 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 114 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 177 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 128 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 192 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 115 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 50 bp overlap
ChIP prostate_P7_T GSE130408.AR.prostate_P7_T 124 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 174 bp overlap
BRD4 3 datasets
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 311 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 94 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 185 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 82 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 156 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 122 bp overlap
CTCF 114 datasets
ChIP A-549 ENCSR000DNA.CTCF.A-549 145 bp overlap
ChIP A549 ENCFF182TCQ 199 bp overlap
ChIP C4-2B ENCFF821XVN 323 bp overlap
ChIP C4-2B ENCFF821XVN 292 bp overlap
ChIP GM23338 ENCFF531QOI 182 bp overlap
ChIP GM23338 ENCFF772DML 98 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 323 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 129 bp overlap
ChIP H9 ENCFF152GTF 229 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 99 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 208 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 201 bp overlap
ChIP Hep-G2 ENCSR000AMA.CTCF.Hep-G2 153 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 92 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 141 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 156 bp overlap
ChIP LNCAP ENCFF223HIG 323 bp overlap
ChIP LNCAP ENCFF700QXT 323 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 290 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 193 bp overlap
ChIP LNCaP ENCSR000DME.CTCF.LNCaP 138 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 174 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 174 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 310 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 216 bp overlap
ChIP MCF-7 ENCFF162GNE 226 bp overlap
ChIP MCF-7 ENCFF198DQX 212 bp overlap
ChIP MCF-7 ENCFF414SZG 51 bp overlap
ChIP MCF-7 ENCFF424NQR 150 bp overlap
ChIP MCF-7 ENCFF494VXA 212 bp overlap
ChIP MCF-7 ENCFF844STM 148 bp overlap
ChIP MCF-7 ENCFF954TUV 65 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 185 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 229 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 250 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 124 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 140 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 152 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 212 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 274 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 239 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 158 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 191 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.CTCF.MCF-7_E2_SHCTCF 121 bp overlap
ChIP MCF-7_TAM ERP000380.CTCF.MCF-7_TAM 147 bp overlap
ChIP MCF-7_TAM ERP000783.CTCF.MCF-7_TAM 122 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 153 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 163 bp overlap
ChIP RWPE2 ENCFF911IEE 323 bp overlap
ChIP VCaP ENCFF858YQT 162 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 323 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 144 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 122 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 152 bp overlap
ChIP body of pancreas ENCFF438KTE 323 bp overlap
ChIP body of pancreas ENCFF881RGF 223 bp overlap
ChIP brain ENCFF685VRG 323 bp overlap
ChIP brain ENCFF685VRG 323 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 177 bp overlap
ChIP endodermal cell ENCFF471YCZ 251 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 132 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 226 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 323 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 208 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 164 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 158 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 134 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 122 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 146 bp overlap
ChIP keratinocyte ENCFF046PBT 95 bp overlap
ChIP keratinocyte ENCFF291YDC 93 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 323 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 190 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 197 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 215 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 186 bp overlap
ChIP leukemia_CEBPA-168h GSE142161.CTCF.leukemia_CEBPA-168h 202 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 214 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 264 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 186 bp overlap
ChIP myotube ENCFF981UHL 277 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 227 bp overlap
ChIP nerve_tibial ENCSR822PJT.CTCF.nerve_tibial 269 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 235 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 323 bp overlap
ChIP neural progenitor cell ENCFF420RBO 190 bp overlap
ChIP neural progenitor cell ENCFF581WPG 323 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 268 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 220 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 179 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d3 160 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 315 bp overlap
ChIP prostate ENCSR946MNG.CTCF.prostate 237 bp overlap
ChIP prostate gland ENCFF193LJV 298 bp overlap
ChIP prostate gland ENCFF655GBO 269 bp overlap
ChIP prostate gland ENCFF979KAF 96 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 323 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 257 bp overlap
ChIP prostate_gland ENCSR829HTO.CTCF.prostate_gland 226 bp overlap
ChIP retina_AB1-FW16 GSE86981.CTCF.retina_AB1-FW16 165 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 209 bp overlap
ChIP smooth muscle cell ENCFF656FBT 271 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 216 bp overlap
ChIP thyroid gland ENCFF204HWS 196 bp overlap
ChIP thyroid gland ENCFF300RYK 314 bp overlap
ChIP thyroid gland ENCFF631QRY 323 bp overlap
ChIP thyroid-gland ENCSR492ZIW.CTCF.thyroid-gland 323 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 259 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 206 bp overlap
ChIP thyroid-gland ENCSR145HBC.CTCF.thyroid-gland 197 bp overlap
ChIP tibial nerve ENCFF665IWH 316 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 137 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 233 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 133 bp overlap
ESR1 15 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 192 bp overlap
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_4-OHT_clone14 215 bp overlap
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.ESR1.MCF-7_ARID1A-KO_clone14 178 bp overlap
ChIP MCF-7_E2-320min-ERalpha GSE94023.ESR1.MCF-7_E2-320min-ERalpha 151 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 217 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 214 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 199 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 214 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 226 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 193 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 205 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 194 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 204 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 180 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 158 bp overlap
EZH2 10 datasets
ChIP GM23338 ENCFF613YON 134 bp overlap
ChIP H1 ENCFF232NZA 323 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 218 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 82 bp overlap
ChIP keratinocyte ENCFF070STK 323 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 297 bp overlap
ChIP neural cell ENCFF610EPB 80 bp overlap
ChIP neural progenitor cell ENCFF018MKA 323 bp overlap
ChIP neural progenitor cell ENCFF018MKA 323 bp overlap
ChIP neural progenitor cell ENCFF472NFV 323 bp overlap
FOXA1 2 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 113 bp overlap
ChIP prostate_P7_T GSE130408.FOXA1.prostate_P7_T 143 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 222 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 320 bp overlap
HIF1A 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.HIF1A.LNCaP_androgen-N_hypoxia-Y 122 bp overlap
HOXB13 7 datasets
ChIP prostate-cancer_PDX_70 GSE130408.HOXB13.prostate-cancer_PDX_70 99 bp overlap
ChIP prostate_2030_T GSE130408.HOXB13.prostate_2030_T 88 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 92 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 133 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 202 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 292 bp overlap
ChIP prostate_P7_T GSE130408.HOXB13.prostate_P7_T 237 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 295 bp overlap
ChIP EDOMIPS2 GSE48516.JARID2.EDOMIPS2 232 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 196 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 187 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 255 bp overlap
MYCN 2 datasets
ChIP LNCaP_DHT GSE117304.MYCN.LNCaP_DHT 207 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 160 bp overlap
MYOD1 2 datasets
ChIP myoblast GSE50413.MYOD1.myoblast 88 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 145 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 70 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 114 bp overlap
PGR 1 dataset
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 131 bp overlap
PHF8 2 datasets
ChIP H1 ENCFF427UFV 323 bp overlap
ChIP H1 ENCFF427UFV 232 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 119 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 323 bp overlap
ChIP prostate gland ENCFF881OMH 169 bp overlap
RAD21 19 datasets
ChIP GP5D GSE51234.RAD21.GP5D 323 bp overlap
ChIP H1 ENCFF698EWO 146 bp overlap
ChIP H1 ENCFF967OJF 228 bp overlap
ChIP MCF-7 ENCFF694KOM 267 bp overlap
ChIP MCF-7 ENCFF724VCQ 235 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 196 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 190 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 202 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 162 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 162 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 201 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 148 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 323 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 228 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 287 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 146 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 152 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 323 bp overlap
ChIP neural cell ENCFF564MOT 158 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 137 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 187 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 321 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 323 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 59 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 98 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 118 bp overlap
SMC3 3 datasets
ChIP GP5D GSE51234.SMC3.GP5D 323 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 323 bp overlap
ChIP neural cell ENCFF795YGY 323 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 131 bp overlap
ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 152 bp overlap
STAG1 6 datasets
ChIP Hep-G2 ERP000209.STAG1.Hep-G2 127 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 156 bp overlap
ChIP HepG2 ENCFF843EBZ 255 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 240 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 221 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 201 bp overlap
SUZ12 2 datasets
ChIP H1 ENCFF881NFR 323 bp overlap
ChIP H1 ENCFF881NFR 78 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 160 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 51 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 100 bp overlap