chr19 : 23,203,789 23,204,323
534 bp 53 TFs 6 linked genes
This 534 bp open chromatin element is linked to 6 target genes and is bound by 53 transcription factors.
Linked Genes
6 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ENSG00000269471 at TSS At TSS Proximity
ZNF724 46.3 kb Distal Multiome
ENSG00000284428 70.2 kb Distal Multiome
ZNF730 128.8 kb Distal Multiome
ZNF91 191.4 kb Distal Multiome
LINC01224 212.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:23,198,789 – 23,209,323
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 210 bp overlap
ARID1B 1 dataset
ChIP MCF-7_shJUN GSE128445.ARID1B.MCF-7_shJUN 294 bp overlap
BCL11A 1 dataset
ChIP MCF-10A ERP003925.BCL11A.MCF-10A 194 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 151 bp overlap
BRD4 4 datasets
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 134 bp overlap
ChIP hESC GSE33281.BRD4.hESC 150 bp overlap
ChIP hESC GSE33281.BRD4.hESC 227 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 376 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 519 bp overlap
ChIP SKNO-1 GSE23730.CBFB.SKNO-1 354 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 214 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 293 bp overlap
CTCF 4 datasets
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 158 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 272 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 339 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 253 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 148 bp overlap
ChIP BLaER1 ENCFF031ISE 73 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000BLI.E2F6.K-562 144 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 135 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 333 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 162 bp overlap
ERG 6 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 211 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 185 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 184 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 239 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 194 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 310 bp overlap
ESR1 4 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 294 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 238 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 328 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 359 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 241 bp overlap
EZH2 1 dataset
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 259 bp overlap
FLI1 2 datasets
ChIP ME-1 GSE46044.FLI1.ME-1 251 bp overlap
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 356 bp overlap
GATA2 1 dataset
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 296 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 413 bp overlap
ISL1 1 dataset
ChIP Huh-7 GSE77957.ISL1.Huh-7 285 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 278 bp overlap
KDM4C 1 dataset
ChIP KYSE-150 GSE53938.KDM4C.KYSE-150 277 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 327 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 157 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 194 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 534 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 534 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 376 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 496 bp overlap
PCBP1 1 dataset
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 218 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 410 bp overlap
POLR2A 4 datasets
ChIP GM23338 ENCFF450WCS 477 bp overlap
ChIP spleen ENCFF446ZGT 339 bp overlap
ChIP spleen ENCFF446ZGT 331 bp overlap
ChIP spleen ENCFF706IUS 345 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 151 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 412 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 220 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 534 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 390 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 389 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 461 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 342 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 207 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 435 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
SIX2 1 dataset
ChIP MCF-7 GSE117145.SIX2.MCF-7 382 bp overlap
SMAD3 1 dataset
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 141 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 469 bp overlap
SPI1 1 dataset
ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 529 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 420 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 294 bp overlap
TBP 4 datasets
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 393 bp overlap
ChIP hiPSC_WTa_RNase-pos GSE128135.TBP.hiPSC_WTa_RNase-pos 323 bp overlap
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 489 bp overlap
ChIP hiPSC_WTb_RNase-pos GSE128135.TBP.hiPSC_WTb_RNase-pos 453 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 272 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 280 bp overlap
TRIM28 3 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 359 bp overlap
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 361 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 451 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 420 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 349 bp overlap
ZFX 1 dataset
ChIP K562 ENCFF536AJO 534 bp overlap
ZNF148 1 dataset
Motif ES_0h ES_0h-ZNF148_MA1653.2 10 bp overlap