chr2 : 10,453,499 10,454,189
690 bp 50 TFs 4 linked genes
This 690 bp open chromatin element is linked to 4 target genes and is bound by 50 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ODC1-DT 4.8 kb Proximal Proximity
ODC1 5.2 kb Proximal Proximity
NOL10 236.2 kb Distal Multiome
ATP6V1C2 267.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:10,448,499 – 10,459,189
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
AGO2 4 datasets
ChIP HepG2 ENCFF252VFI 407 bp overlap
ChIP HepG2 ENCFF252VFI 190 bp overlap
ChIP HepG2 ENCFF773YDL 407 bp overlap
ChIP HepG2 ENCFF773YDL 190 bp overlap
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 204 bp overlap
AR 1 dataset
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 204 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE104545.ARID1A.RMG-I 586 bp overlap
ARNT 1 dataset
ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 279 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 121 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 167 bp overlap
BRD4 12 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 215 bp overlap
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 166 bp overlap
ChIP COLO-205 GSE73319.BRD4.COLO-205 188 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 101 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 53 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 134 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 288 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 690 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 690 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 690 bp overlap
ChIP SUM149_DMSO GSE63581.BRD4.SUM149_DMSO 258 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 366 bp overlap
CEBPB 1 dataset
ChIP Hep-G2 GSE123097.CEBPB.Hep-G2 280 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 394 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 209 bp overlap
CTCF 3 datasets
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 133 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 451 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 372 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 303 bp overlap
DNMT3B 1 dataset
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 148 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 260 bp overlap
ELK1 1 dataset
ChIP A-549 ENCSR623KNM.ELK1.A-549 57 bp overlap
ERG 1 dataset
ChIP RWPE-1 GSE114241.ERG.RWPE-1 454 bp overlap
ESR1 2 datasets
ChIP MCF-7_E2 GSE115607.ESR1.MCF-7_E2 114 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 583 bp overlap
ESRRA 1 dataset
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 232 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 175 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 282 bp overlap
FOXA2 3 datasets
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 281 bp overlap
ChIP DE DE-FOXA2-1 388 bp overlap
ChIP DE DE-FOXA2-2 403 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 474 bp overlap
ChIP DE DE-GATA4-2 572 bp overlap
ChIP foregut GSE117136.GATA4.foregut 417 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 496 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 468 bp overlap
ChIP DE DE-GATA6-2 550 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 394 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 488 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 615 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 385 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 496 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 609 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 460 bp overlap
ChIP foregut GSE117136.GATA6.foregut 470 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 353 bp overlap
HNRNPL 2 datasets
ChIP Hep-G2 GSE120104.HNRNPL.Hep-G2 183 bp overlap
ChIP Hep-G2 ENCSR315JJE.HNRNPL.Hep-G2 169 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 232 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 224 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 343 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 275 bp overlap
MED1 1 dataset
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 226 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 244 bp overlap
MYC 2 datasets
ChIP MCF-10A ENCSR000DOM.MYC.MCF-10A 419 bp overlap
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 293 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 217 bp overlap
RELA 3 datasets
ChIP mammary-epithelial-cell GSE71069.RELA.mammary-epithelial-cell 317 bp overlap
ChIP mammary-epithelial-cell_EGF GSE71069.RELA.mammary-epithelial-cell_EGF 300 bp overlap
ChIP mammary-epithelial-cell_IL1 GSE71069.RELA.mammary-epithelial-cell_IL1 416 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 119 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 571 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 430 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 360 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 312 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 385 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 293 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 323 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 319 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 352 bp overlap
SOX2 3 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 198 bp overlap
ChIP LK2_DNp63 GSE137459.SOX2.LK2_DNp63 384 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 302 bp overlap
SREBF1 1 dataset
ChIP TE-5 GSE143803.SREBF1.TE-5 647 bp overlap
STAT3 4 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 311 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 295 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 297 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 157 bp overlap
SUZ12 1 dataset
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 228 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 211 bp overlap
TEAD1 1 dataset
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 157 bp overlap
TFAP2C 2 datasets
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 163 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 155 bp overlap
TP63 6 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 270 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 236 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 218 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 217 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 262 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 229 bp overlap
TRIM25 1 dataset
ChIP MDA-MB-231 GSE79588.TRIM25.MDA-MB-231 235 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 216 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 315 bp overlap