chr18 : 79,567,133 79,567,644
511 bp 54 TFs 2 linked genes
This 511 bp open chromatin element is linked to CTDP1 and NFATC1 and is bound by 54 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CTDP1 112.5 kb Distal Multiome
NFATC1 171.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:79,562,133 – 79,572,644
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
54 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 220 bp overlap
AR 1 dataset
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 457 bp overlap
ASH2L 4 datasets
ChIP H1 ENCFF399KAM 296 bp overlap
ChIP H1 ENCFF399KAM 65 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 290 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 73 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 180 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 96 bp overlap
BRD2 5 datasets
ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 184 bp overlap
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 74 bp overlap
ChIP LPS141 GSE111253.BRD2.LPS141 109 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 111 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 149 bp overlap
BRD3 1 dataset
ChIP LPS141 GSE111253.BRD3.LPS141 60 bp overlap
BRD4 8 datasets
ChIP HCC1806_100nMtrametinib_24h GSE87418.BRD4.HCC1806_100nMtrametinib_24h 70 bp overlap
ChIP LPS141 GSE111253.BRD4.LPS141 159 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 77 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 258 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 511 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 55 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 511 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 113 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 206 bp overlap
CEBPB 1 dataset
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 143 bp overlap
CTCF 2 datasets
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 205 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 188 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 179 bp overlap
ChIP BLaER1 ENCFF093OYK 209 bp overlap
ChIP BLaER1 ENCFF335XTP 116 bp overlap
DNMT3B 1 dataset
ChIP HUES-8 GSE99346.DNMT3B.HUES-8 313 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 86 bp overlap
ESR1 8 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 121 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 213 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 182 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 212 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 178 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 89 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 59 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 108 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 154 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 135 bp overlap
ChIP A-1847 GSE95643.EZH2.A-1847 227 bp overlap
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 86 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 81 bp overlap
JUN 8 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 104 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 269 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 337 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 115 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 56 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 311 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
ChIP MDA-BoM-1833_shp27 GSE112444.JUN.MDA-BoM-1833_shp27 149 bp overlap
KAT7 2 datasets
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 159 bp overlap
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 108 bp overlap
KDM1A 2 datasets
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 141 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 127 bp overlap
KMT2A 1 dataset
ChIP THP-1 GSE83671.KMT2A.THP-1 74 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 191 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 155 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 252 bp overlap
NEUROG2 3 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 173 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 69 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 67 bp overlap
OGG1 5 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 200 bp overlap
ChIP HEK293 GSE89017.OGG1.HEK293 236 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 511 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 511 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 195 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 191 bp overlap
POLR2A 1 dataset
ChIP vagina ENCFF384GAB 74 bp overlap
POU5F1 1 dataset
ChIP SKM-1 GSE93706.POU5F1.SKM-1 156 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 511 bp overlap
RAD21 4 datasets
ChIP HCT-116 GSE131606.RAD21.HCT-116 167 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 58 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 127 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 125 bp overlap
RBPJ 1 dataset
ChIP HCC1599 GSE116871.RBPJ.HCC1599 96 bp overlap
RELA 3 datasets
ChIP HEK293_15min GSE89017.RELA.HEK293_15min 261 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 71 bp overlap
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 55 bp overlap
RNF2 1 dataset
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 86 bp overlap
RUNX1 2 datasets
ChIP Jurkat GSE85524.RUNX1.Jurkat 92 bp overlap
ChIP NB4 GSE81992.RUNX1.NB4 194 bp overlap
SKI 3 datasets
ChIP HL-60 GSE107553.SKI.HL-60 252 bp overlap
ChIP HL-60 GSE107553.SKI.HL-60 182 bp overlap
ChIP HL-60_CRISPRCas9_ctrl GSE107553.SKI.HL-60_CRISPRCas9_ctrl 159 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 279 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 177 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 511 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 511 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 511 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 511 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 511 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 511 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 511 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 475 bp overlap
SMARCA4 6 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 151 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 201 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 365 bp overlap
ChIP SYO-1 GSE108025.SMARCA4.SYO-1 511 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 187 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 59 bp overlap
SMARCC1 2 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 381 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 198 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 511 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 96 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 148 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 108 bp overlap
SS18 2 datasets
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 178 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 394 bp overlap
STAT3 3 datasets
ChIP A139 GSE85579.STAT3.A139 126 bp overlap
ChIP A139 GSE85579.STAT3.A139 231 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 168 bp overlap
SUZ12 1 dataset
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 110 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 195 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 157 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 179 bp overlap
TP63 1 dataset
ChIP SUIT-2 GSE115461.TP63.SUIT-2 176 bp overlap
ZBTB48 1 dataset
ChIP U2OS GSE96776.ZBTB48.U2OS 141 bp overlap