chr18 : 76,621,387 76,621,780
393 bp 55 TFs 1 linked gene
This 393 bp open chromatin element is linked to LINC00683 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00683 905 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:76,616,387 – 76,626,780
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 4 datasets
ChIP breast_tumor_Male_10 GSE104399.AR.breast_tumor_Male_10 122 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 120 bp overlap
ChIP prostate GSE56288.AR.prostate 118 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 109 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 187 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 186 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 121 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 332 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 213 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 121 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 335 bp overlap
BRD4 3 datasets
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 126 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 171 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 393 bp overlap
CBX2 1 dataset
ChIP HepG2 ENCFF838BNI 250 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 240 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT1063 GSE128230.CDK8.leiomyoma_PT1063 92 bp overlap
CTCF 1 dataset
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 71 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 136 bp overlap
ESR1 9 datasets
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 135 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 202 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 393 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 393 bp overlap
ChIP breast_tumor_Male_30 GSE104399.ESR1.breast_tumor_Male_30 187 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 205 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 169 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 393 bp overlap
ChIP primary-endometrium-cancer_E2_DSG GSE114737.ESR1.primary-endometrium-cancer_E2_DSG 393 bp overlap
ETV1 1 dataset
ChIP GIST GSE22441.ETV1.GIST 103 bp overlap
EZH2 1 dataset
ChIP DND41 ENCSR000ASW.EZH2.DND41 279 bp overlap
FOXA1 27 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 285 bp overlap
ChIP LNCaP GSE56288.FOXA1.LNCaP 150 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 241 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 232 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 274 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 152 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 287 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 323 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 177 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 290 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 241 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 393 bp overlap
ChIP breast_tumor_Female_3 GSE104399.FOXA1.breast_tumor_Female_3 355 bp overlap
ChIP breast_tumor_Female_7 GSE104399.FOXA1.breast_tumor_Female_7 299 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 317 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 319 bp overlap
ChIP liver ERP002306.FOXA1.liver 173 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 278 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 393 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 287 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 274 bp overlap
ChIP primary-prostate-cancer_P1_DSG GSE114737.FOXA1.primary-prostate-cancer_P1_DSG 222 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 80 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 169 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 155 bp overlap
ChIP prostate_P27_T GSE130408.FOXA1.prostate_P27_T 172 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 283 bp overlap
FOXA2 9 datasets
ChIP DE DE-FOXA2-1 393 bp overlap
ChIP DE DE-FOXA2-2 393 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 250 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 376 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 316 bp overlap
ChIP liver ENCFF877SFI 250 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 181 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 180 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 257 bp overlap
FOXL2 1 dataset
ChIP KGN_1513 GSE138496.FOXL2.KGN_1513 229 bp overlap
FOXP4 1 dataset
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 162 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 141 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 54 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 236 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-2 243 bp overlap
HNF4A 2 datasets
ChIP liver ENCFF354NRH 320 bp overlap
ChIP liver ERP002306.HNF4A.liver 162 bp overlap
HOXB13 9 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 92 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 102 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 269 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 393 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 205 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 145 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 172 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 267 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 393 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 227 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_C104 GSE90762.KMT2A.HEK293T_N-term_C104 222 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 320 bp overlap
MAX 2 datasets
ChIP NCI-H128 GSE41105.MAX.NCI-H128 338 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 178 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 62 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 64 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 211 bp overlap
NANOG 5 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 121 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 393 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 248 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 176 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 352 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 68 bp overlap
PGR 4 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 393 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 393 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 359 bp overlap
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 310 bp overlap
PHIP 1 dataset
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 127 bp overlap
POLR2A 6 datasets
ChIP IMR-90 ENCFF672YWV 393 bp overlap
ChIP adrenal gland ENCFF843OBJ 282 bp overlap
ChIP body of pancreas ENCFF501FEC 378 bp overlap
ChIP prostate gland ENCFF545MVF 349 bp overlap
ChIP prostate gland ENCFF881OMH 122 bp overlap
ChIP uterus ENCFF208ADI 235 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 370 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 346 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 268 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 156 bp overlap
SAP30 2 datasets
ChIP H1 ENCFF149IOE 345 bp overlap
ChIP WA01 ENCSR000ATR.SAP30.WA01 233 bp overlap
SIN3A 2 datasets
ChIP H1 ENCFF042ZSL 235 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 127 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 304 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 148 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 178 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 319 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 75 bp overlap
SMARCA4 3 datasets
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 85 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 333 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 365 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 191 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 94 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 300 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 83 bp overlap
STAT3 3 datasets
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 104 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 202 bp overlap
ChIP T-47D_JC5062 GSE126004.STAT3.T-47D_JC5062 70 bp overlap
USF1 1 dataset
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 91 bp overlap
YY1 2 datasets
ChIP liver ENCFF515BWJ 393 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 52 bp overlap
ZNF425 1 dataset
ChIP HEK293T GSE78099.ZNF425.HEK293T 342 bp overlap
ZNF485 1 dataset
ChIP HEK293T GSE78099.ZNF485.HEK293T 341 bp overlap