chr18 : 46,338,293 46,338,532
239 bp 48 TFs 1 linked gene
This 239 bp open chromatin element is linked to ARK2C and is bound by 48 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
ARK2C 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:46,333,293 – 46,343,532
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
48 transcription factors
Source
Cell type
ASCL1 1 dataset
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 176 bp overlap
BRD4 6 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 185 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 239 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 144 bp overlap
ChIP retina_AB1-FW13 GSE86981.BRD4.retina_AB1-FW13 113 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 239 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 209 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 239 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 74 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCFF669KMB 239 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 172 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 202 bp overlap
CTCF 28 datasets
ChIP BE2C ENCFF757SRF 239 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 199 bp overlap
ChIP D721Med ENCFF513FYD 210 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H9 ENCFF152GTF 239 bp overlap
ChIP H9 ENCFF152GTF 133 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 230 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 194 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 195 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 177 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 196 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 220 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 117 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 175 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 118 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 165 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 230 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 155 bp overlap
ChIP brain ENCFF163BBN 239 bp overlap
ChIP cardiac muscle cell ENCFF777TNC 239 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 237 bp overlap
ChIP endodermal cell ENCFF471YCZ 239 bp overlap
ChIP endodermal cell ENCFF471YCZ 147 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 178 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 239 bp overlap
ChIP neural cell ENCFF335ADI 239 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 112 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 191 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 239 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 191 bp overlap
EZH2 1 dataset
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 206 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 129 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 195 bp overlap
ChIP SK-N-SH ENCFF764OZD 239 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 239 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 212 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 233 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 162 bp overlap
KMT2A 2 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 182 bp overlap
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 239 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 194 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 173 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 239 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 190 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 95 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 141 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 239 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 239 bp overlap
MYOD1 5 datasets
ChIP RD GSE137168.MYOD1.RD 189 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 221 bp overlap
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 239 bp overlap
ChIP SMS-CTR GSE137168.MYOD1.SMS-CTR 201 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 176 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 227 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 206 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 197 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 239 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 186 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 197 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 239 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 239 bp overlap
PBX2 1 dataset
ChIP K562 ENCFF286KMN 61 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 109 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 239 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 239 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 236 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 220 bp overlap
ChIP SK-N-SH ENCFF747MAS 228 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 160 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 218 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 200 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 239 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 140 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCFF518EXB 239 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 167 bp overlap
RORB 1 dataset
ChIP retina_Hu22 GSE137311.RORB.retina_Hu22 239 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 170 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 212 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 173 bp overlap
SIX2 1 dataset
ChIP HEK GSE73865.SIX2.HEK 215 bp overlap
SMARCA4 2 datasets
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 115 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 239 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 239 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 209 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 192 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 154 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 226 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 223 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 202 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 202 bp overlap