chr15 : 57,501,832 57,502,700
868 bp 59 TFs 3 linked genes
This 868 bp open chromatin element is linked to CGNL1, POLR2M, and TCF12 and is bound by 59 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
CGNL1 125.7 kb Distal Multiome
POLR2M 204.5 kb Distal Multiome
TCF12 583.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:57,496,832 – 57,507,700
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ARID3A 1 dataset
ChIP HepG2 ENCFF341DES 211 bp overlap
BRD2 1 dataset
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 100 bp overlap
BRD4 3 datasets
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 299 bp overlap
ChIP HUVEC-C GSE53998.BRD4.HUVEC-C 298 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 610 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 258 bp overlap
ChIP BLaER1 ENCFF335XTP 119 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ChIP hESC GSE26097.EOMES.hESC 288 bp overlap
ERG 5 datasets
ChIP aortic-endothelial-cell_D13 GSE139377.ERG.aortic-endothelial-cell_D13 172 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 165 bp overlap
ChIP aortic-endothelial-cell_D33 GSE139377.ERG.aortic-endothelial-cell_D33 197 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 263 bp overlap
ChIP aortic-endothelial-cell_D53 GSE139377.ERG.aortic-endothelial-cell_D53 163 bp overlap
ESR1 4 datasets
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 193 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 166 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 210 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 92 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 578 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_72h DE_72h-EWSR1-FLI1_MA0149.1 18 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 615 bp overlap
GATA2 4 datasets
Motif DE_36h DE_36h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 187 bp overlap
GATA4 13 datasets
ChIP DE DE-GATA4-1 860 bp overlap
ChIP DE DE-GATA4-2 868 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP G296S GSE85628.GATA4.G296S 318 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 318 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 197 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 483 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 395 bp overlap
ChIP foregut GSE117136.GATA4.foregut 860 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 653 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 555 bp overlap
GATA6 19 datasets
ChIP AGS GSE51705.GATA6.AGS 178 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 176 bp overlap
ChIP DE DE-GATA6-1 868 bp overlap
ChIP DE DE-GATA6-2 868 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 676 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 868 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 868 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 868 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 868 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 868 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 868 bp overlap
ChIP foregut GSE117136.GATA6.foregut 825 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 668 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 517 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 678 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 556 bp overlap
Gata3 3 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Irf1 2 datasets
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
Motif DE_72h DE_72h-Irf1_MA0050.4 11 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 525 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 61 bp overlap
MED1 4 datasets
ChIP G296S GSE85628.MED1.G296S 331 bp overlap
ChIP G296S_2 GSE85628.MED1.G296S_2 331 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 240 bp overlap
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 414 bp overlap
MYC 1 dataset
ChIP PAVE GSE47152.MYC.PAVE 165 bp overlap
NCAPH2 3 datasets
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 182 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 253 bp overlap
ChIP RMG-I_ARID1A-KO GSE120058.NCAPH2.RMG-I_ARID1A-KO 107 bp overlap
NFATC3 4 datasets
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 198 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 204 bp overlap
NR2C2 1 dataset
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
NR2F2 5 datasets
ChIP liver ENCFF427MRU 421 bp overlap
ChIP liver ENCFF427MRU 334 bp overlap
ChIP liver ENCFF565JGD 313 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 498 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 413 bp overlap
NR2F6 2 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 181 bp overlap
ChIP HepG2 ENCFF514UJI 205 bp overlap
Nfat5 2 datasets
Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap
Motif DE_72h DE_72h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 4 datasets
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 2 datasets
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
Motif DE_72h DE_72h-Nfatc2_MA0152.3 8 bp overlap
PHF19 1 dataset
ChIP DU145_SH4 GSE135623.PHF19.DU145_SH4 168 bp overlap
POLR2A 1 dataset
ChIP thyroid gland ENCFF979LRR 491 bp overlap
POU5F1 1 dataset
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 290 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 101 bp overlap
PPARA::RXRA 2 datasets
Motif DE_60h DE_60h-PPARARXRA_MA1148.2 17 bp overlap
Motif DE_72h DE_72h-PPARARXRA_MA1148.2 17 bp overlap
PPARG 2 datasets
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF329FBJ 300 bp overlap
PRDM9 2 datasets
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Motif DE_72h DE_72h-PRDM9_MA1723.2 20 bp overlap
Prdm4 2 datasets
Motif DE_60h DE_60h-Prdm4_MA1647.3 11 bp overlap
Motif DE_72h DE_72h-Prdm4_MA1647.3 11 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RELA 8 datasets
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 156 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 276 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 357 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 285 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 255 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 190 bp overlap
REST 2 datasets
Motif DE_60h DE_60h-REST_MA0138.3 20 bp overlap
ChIP PFSK-1 ENCFF845VHA 321 bp overlap
SFPQ 1 dataset
ChIP HepG2 ENCFF145CDF 661 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 137 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 868 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 738 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 612 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 608 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 373 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 809 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 816 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 169 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 165 bp overlap
SMARCA4 2 datasets
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 147 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 199 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 243 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 533 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 794 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TRPS1 3 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Yy1 2 datasets
Motif DE_60h DE_60h-Yy1_MA0095.4 8 bp overlap
Motif DE_72h DE_72h-Yy1_MA0095.4 8 bp overlap
ZFP42 3 datasets
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZNF140 3 datasets
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF281 2 datasets
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_72h DE_72h-ZNF281_MA1630.3 10 bp overlap
ZNF282 2 datasets
Motif DE_60h DE_60h-ZNF282_MA1154.2 15 bp overlap
Motif DE_72h DE_72h-ZNF282_MA1154.2 15 bp overlap
ZNF418 2 datasets
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
Motif DE_72h DE_72h-ZNF418_MA1980.1 15 bp overlap
ZNF75A 2 datasets
Motif DE_60h DE_60h-ZNF75A_MA2097.1 12 bp overlap
Motif DE_72h DE_72h-ZNF75A_MA2097.1 12 bp overlap