chr13 : 96,844,192 96,845,106
914 bp 110 TFs 0 linked genes
This 914 bp open chromatin element has no linked target genes and is bound by 110 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:96,839,192 – 96,850,106
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
110 transcription factors
Source
Cell type
AHR 1 dataset
ChIP MCF-7_TCDD_45min GSE90550.AHR.MCF-7_TCDD_45min 211 bp overlap
ASCL1 3 datasets
Motif DE_36h DE_36h-ASCL1_MA1631.2 9 bp overlap
Motif DE_60h DE_60h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H889 GSE69394.ASCL1.NCI-H889 172 bp overlap
Arid3a 2 datasets
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 827 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 476 bp overlap
BRD4 5 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 216 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 268 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 456 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 641 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 645 bp overlap
CEBPA 1 dataset
ChIP THP-1_EtOH_8h GSE124032.CEBPA.THP-1_EtOH_8h 93 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
Dux 2 datasets
Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 345 bp overlap
ChIP hESC GSE26097.EOMES.hESC 247 bp overlap
ESR1 8 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 292 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 221 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 168 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 219 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 231 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 218 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 228 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 251 bp overlap
ESR1_D538G 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_D538G.MCF-7_dox 245 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_D538G.MCF-7_dox_E2 227 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 270 bp overlap
ChIP MCF-7_talen GSE94493.ESR1_Y537N.MCF-7_talen 159 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 252 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 359 bp overlap
ETV1 3 datasets
Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 109 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 196 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 316 bp overlap
FIGLA 4 datasets
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_36h DE_36h-FIGLA_MA0820.2 6 bp overlap
Motif DE_48h DE_48h-FIGLA_MA0820.2 6 bp overlap
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOXA1 2 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 248 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 315 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 293 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 249 bp overlap
ChIP DE DE-FOXA2-1 742 bp overlap
ChIP DE DE-FOXA2-2 580 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 257 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 217 bp overlap
GATA3 4 datasets
ChIP MCF-7 GSE133072.GATA3.MCF-7 315 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 232 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 127 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 287 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 788 bp overlap
ChIP DE DE-GATA4-2 792 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 380 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 292 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 407 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 409 bp overlap
GATA6 14 datasets
ChIP DE DE-GATA6-1 805 bp overlap
ChIP DE DE-GATA6-2 840 bp overlap
Motif DE_36h DE_36h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 914 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 914 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 850 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 638 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 914 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 914 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 277 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 573 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 357 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 458 bp overlap
GLI2 1 dataset
ChIP HEK293 ENCFF700EUN 305 bp overlap
Gata3 2 datasets
Motif DE_36h DE_36h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HIC2 2 datasets
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
Motif DE_48h DE_48h-HIC2_MA0738.2 6 bp overlap
HMGA1 1 dataset
ChIP IMR-90_RAS-induced GSE111841.HMGA1.IMR-90_RAS-induced 356 bp overlap
HOXA10 2 datasets
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXA3 2 datasets
Motif DE_36h DE_36h-HOXA3_MA2119.1 7 bp overlap
Motif DE_48h DE_48h-HOXA3_MA2119.1 7 bp overlap
HOXA4 2 datasets
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 369 bp overlap
HOXB9 2 datasets
Motif DE_36h DE_36h-HOXB9_MA1503.2 9 bp overlap
Motif DE_48h DE_48h-HOXB9_MA1503.2 9 bp overlap
HOXC10 2 datasets
Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap
Motif DE_48h DE_48h-HOXC10_MA0905.2 9 bp overlap
HOXC11 2 datasets
Motif DE_36h DE_36h-HOXC11_MA0651.3 11 bp overlap
Motif DE_48h DE_48h-HOXC11_MA0651.3 11 bp overlap
HOXC12 2 datasets
Motif DE_36h DE_36h-HOXC12_MA0906.2 10 bp overlap
Motif DE_48h DE_48h-HOXC12_MA0906.2 10 bp overlap
HOXC4 2 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
HOXC9 2 datasets
Motif DE_36h DE_36h-HOXC9_MA0485.3 9 bp overlap
Motif DE_48h DE_48h-HOXC9_MA0485.3 9 bp overlap
HOXD10 2 datasets
Motif DE_36h DE_36h-HOXD10_MA1506.2 10 bp overlap
Motif DE_48h DE_48h-HOXD10_MA1506.2 10 bp overlap
HOXD11 2 datasets
Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap
Motif DE_48h DE_48h-HOXD11_MA0908.2 9 bp overlap
HOXD12 2 datasets
Motif DE_36h DE_36h-HOXD12_MA0873.2 10 bp overlap
Motif DE_48h DE_48h-HOXD12_MA0873.2 10 bp overlap
HOXD4 2 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
HOXD9 2 datasets
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hoxa11 2 datasets
Motif DE_36h DE_36h-Hoxa11_MA0911.2 9 bp overlap
Motif DE_48h DE_48h-Hoxa11_MA0911.2 9 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 2 datasets
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
Motif DE_48h DE_48h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 245 bp overlap
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 191 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 162 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 328 bp overlap
MGA 2 datasets
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 2 datasets
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_60h DE_60h-MGAEVX1_MA1960.2 11 bp overlap
MSC 2 datasets
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
Motif DE_48h DE_48h-MSC_MA0665.1 10 bp overlap
MYOD1 2 datasets
Motif DE_36h DE_36h-MYOD1_MA0499.3 9 bp overlap
Motif DE_60h DE_60h-MYOD1_MA0499.3 9 bp overlap
NFIB 2 datasets
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 242 bp overlap
NKX6-1 2 datasets
Motif DE_36h DE_36h-NKX6-1_MA0674.2 7 bp overlap
Motif DE_48h DE_48h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 2 datasets
Motif DE_36h DE_36h-NKX6-3_MA1530.2 8 bp overlap
Motif DE_48h DE_48h-NKX6-3_MA1530.2 8 bp overlap
NR4A1 1 dataset
ChIP Kasumi-1 GSE79491.NR4A1.Kasumi-1 215 bp overlap
OSR2 3 datasets
Motif DE_36h DE_36h-OSR2_MA1646.2 8 bp overlap
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 225 bp overlap
PAX4 2 datasets
Motif DE_36h DE_36h-PAX4_MA0068.2 8 bp overlap
Motif DE_48h DE_48h-PAX4_MA0068.2 8 bp overlap
PDX1 2 datasets
ChIP islet ERP001456.PDX1.islet 290 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 298 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 385 bp overlap
ChIP stomach ENCFF820WZN 300 bp overlap
POU2F3 2 datasets
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 310 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 247 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 420 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 142 bp overlap
Ptf1A 2 datasets
Motif DE_36h DE_36h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_48h DE_48h-Ptf1A_MA1620.2 8 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 154 bp overlap
RORA 2 datasets
Motif DE_36h DE_36h-RORA_MA0072.2 11 bp overlap
Motif DE_48h DE_48h-RORA_MA0072.2 11 bp overlap
RORB 2 datasets
Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap
Motif DE_48h DE_48h-RORB_MA1150.2 10 bp overlap
RORC 4 datasets
Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap
Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap
Motif DE_48h DE_48h-RORC_MA1151.2 10 bp overlap
Motif DE_60h DE_60h-RORC_MA1151.2 10 bp overlap
SCRT1 1 dataset
Motif DE_36h DE_36h-SCRT1_MA0743.3 10 bp overlap
SCRT2 1 dataset
Motif DE_36h DE_36h-SCRT2_MA0744.3 10 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 171 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 566 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 826 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 236 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 660 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 420 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 152 bp overlap
SNAI2 2 datasets
Motif DE_36h DE_36h-SNAI2_MA0745.3 8 bp overlap
Motif DE_48h DE_48h-SNAI2_MA0745.3 8 bp overlap
SNAI3 2 datasets
Motif DE_36h DE_36h-SNAI3_MA1559.2 9 bp overlap
Motif DE_48h DE_48h-SNAI3_MA1559.2 9 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 751 bp overlap
STAT1 3 datasets
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
Motif DE_36h DE_36h-STAT1_MA0137.4 9 bp overlap
Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap
STAT3 3 datasets
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Motif DE_36h DE_36h-STAT3_MA0144.3 9 bp overlap
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Stat4 3 datasets
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_36h DE_36h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif DE_36h DE_36h-Stat5b_MA1625.2 9 bp overlap
T 3 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 215 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 182 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 224 bp overlap
TBR1 2 datasets
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX2 2 datasets
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX3 2 datasets
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_36h DE_36h-TBX4_MA0806.1 8 bp overlap
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TCF4 2 datasets
Motif DE_36h DE_36h-TCF4_MA0830.3 8 bp overlap
Motif DE_60h DE_60h-TCF4_MA0830.3 8 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 442 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 383 bp overlap
TOX2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 292 bp overlap
TRPS1 2 datasets
Motif DE_36h DE_36h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
ZBTB24 2 datasets
Motif DE_36h DE_36h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
ZEB1 4 datasets
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_36h DE_36h-ZEB1_MA0103.4 6 bp overlap
Motif DE_48h DE_48h-ZEB1_MA0103.4 6 bp overlap
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 160 bp overlap
ZNF157 1 dataset
Motif DE_36h DE_36h-ZNF157_MA2331.1 21 bp overlap
ZNF24 2 datasets
Motif DE_36h DE_36h-ZNF24_MA1124.1 13 bp overlap
Motif DE_48h DE_48h-ZNF24_MA1124.1 13 bp overlap
ZNF418 2 datasets
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
ZNF528 1 dataset
Motif DE_36h DE_36h-ZNF528_MA1597.1 17 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF708 2 datasets
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF816 1 dataset
Motif DE_36h DE_36h-ZNF816_MA1719.2 15 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 425 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 314 bp overlap