chr13 : 59,364,664 – 59,365,084
420 bp 60 TFs 0 linked genes
This 420 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:59,359,664 – 59,370,084
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 281 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD4 3 datasets
ChIP BE2C GSE80151.BRD4.BE2C 420 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 420 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 244 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
Bhlha15 2 datasets
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
Motif ES_0h ES_0h-Bhlha15_MA1472.3 8 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 387 bp overlap
CTCF 101 datasets
ChIP BE2C ENCFF757SRF 244 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 258 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 159 bp overlap
ChIP GM12867 ENCSR000DRH.CTCF.GM12867 105 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 141 bp overlap
ChIP GM12873 ENCFF711LOS 205 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 216 bp overlap
ChIP H1 ENCFF764RHO 231 bp overlap
ChIP H9 ENCFF152GTF 196 bp overlap
ChIP HAP1 GSE94992.CTCF.HAP1 248 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 248 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 224 bp overlap
ChIP HEC-1-B_ac1-CBS-deletion GSE140868.CTCF.HEC-1-B_ac1-CBS-deletion 82 bp overlap
ChIP HEK293 ENCFF498RMM 234 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 179 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 161 bp overlap
ChIP HUDEP-2_30min GSE104676.CTCF.HUDEP-2_30min 108 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 255 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 99 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 106 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.CTCF.K-562_enCRISPRi-LK 299 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 138 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 153 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 131 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 242 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 125 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 272 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 254 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 173 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 157 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 200 bp overlap
ChIP body of pancreas ENCFF269EDN 296 bp overlap
ChIP body of pancreas ENCFF881RGF 260 bp overlap
ChIP brain ENCFF685VRG 321 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 224 bp overlap
ChIP colon_sigmoid ENCSR925GDS.CTCF.colon_sigmoid 215 bp overlap
ChIP colon_transverse ENCSR833FWC.CTCF.colon_transverse 295 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 233 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 175 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 120 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-neg 155 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 184 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 294 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF514PNC 313 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF628TCI 350 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 333 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 128 bp overlap
ChIP endodermal cell ENCFF471YCZ 256 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 163 bp overlap
ChIP esophagus squamous epithelium ENCFF700BXI 316 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 210 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 254 bp overlap
ChIP esophagus_squamous-epithelium ENCSR756URL.CTCF.esophagus_squamous-epithelium 147 bp overlap
ChIP fibroblast of pulmonary artery ENCFF742RSV 254 bp overlap
ChIP fibroblast_PULMONARY_ARTERY ENCSR000DUX.CTCF.fibroblast_PULMONARY_ARTERY 162 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 353 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 263 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 284 bp overlap
ChIP heart ENCSR778ZPK.CTCF.heart 257 bp overlap
ChIP heart ENCSR565HBN.CTCF.heart 216 bp overlap
ChIP heart ENCSR355PMV.CTCF.heart 206 bp overlap
ChIP heart left ventricle ENCFF663LEI 360 bp overlap
ChIP heart left ventricle ENCFF888ERQ 306 bp overlap
ChIP heart right ventricle ENCFF022KFI 358 bp overlap
ChIP heart right ventricle ENCFF022KFI 151 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 165 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 182 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 151 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 58 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 184 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 167 bp overlap
ChIP islet ERP004003.CTCF.islet 227 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 330 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 129 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 359 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 290 bp overlap
ChIP neural progenitor cell ENCFF420RBO 302 bp overlap
ChIP neural progenitor cell ENCFF581WPG 328 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 219 bp overlap
ChIP pancreas_body ENCSR265PFQ.CTCF.pancreas_body 202 bp overlap
ChIP pancreas_body ENCSR484DDO.CTCF.pancreas_body 140 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 110 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 240 bp overlap
ChIP right atrium auricular region ENCFF696NTN 297 bp overlap
ChIP sigmoid colon ENCFF219LPW 253 bp overlap
ChIP sigmoid colon ENCFF397ZZF 337 bp overlap
ChIP sigmoid colon ENCFF397ZZF 134 bp overlap
ChIP sigmoid colon ENCFF848HFJ 263 bp overlap
ChIP sigmoid-colon ENCSR857RJQ.CTCF.sigmoid-colon 289 bp overlap
ChIP spleen ENCFF065CBS 408 bp overlap
ChIP stomach ENCFF719DAZ 302 bp overlap
ChIP stomach ENCFF767CVC 352 bp overlap
ChIP stomach ENCFF767CVC 152 bp overlap
ChIP stomach ENCSR361KVZ.CTCF.stomach 321 bp overlap
ChIP transverse colon ENCFF454PBI 340 bp overlap
ChIP transverse colon ENCFF471AZS 271 bp overlap
ChIP transverse colon ENCFF594PFO 314 bp overlap
ChIP transverse colon ENCFF749DPF 373 bp overlap
ChIP transverse colon ENCFF749DPF 172 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 301 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 118 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 381 bp overlap
ChIP BLaER1 ENCFF364PUR 230 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 282 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 203 bp overlap
EZH2 2 datasets
ChIP LNCaP GSE39459.EZH2.LNCaP 220 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 155 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 115 bp overlap
ChIP DE DE-FOXA2-2 216 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 272 bp overlap
ChIP SK-N-SH ENCFF124KVL 290 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 308 bp overlap
ChIP SK-N-SH ENCFF764OZD 268 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 328 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 217 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 185 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 132 bp overlap
ChIP DE DE-GATA4-2 349 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 236 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 376 bp overlap
ChIP DE DE-GATA6-2 420 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 85 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 268 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 100 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 266 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 420 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 192 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 398 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 192 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 146 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 112 bp overlap
ChIP P493-6_24HR GSE125863.MYC.P493-6_24HR 298 bp overlap
MYF5 2 datasets
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
Motif ES_0h ES_0h-MYF5_MA1641.2 8 bp overlap
MYOG 2 datasets
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 274 bp overlap
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 180 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif ES_0h ES_0h-NEUROD1_MA1109.2 8 bp overlap
NFE2 1 dataset
ChIP ProEs GSE59087.NFE2.ProEs 137 bp overlap
Neurod2 4 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA0668.3 8 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 65 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 420 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF748YVT 180 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 148 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RAD21 2 datasets
ChIP H1 ENCFF967OJF 224 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 128 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 340 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 420 bp overlap
Runx1 1 dataset
Motif DE_12h DE_12h-Runx1_MA0002.3 9 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 202 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 225 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 73 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 211 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 304 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 111 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 111 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 205 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 381 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 420 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 187 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 187 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif ES_0h ES_0h-Thap11_MA1573.2 14 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 63 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 173 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF496 1 dataset
ChIP HEK293T GSE78099.ZNF496.HEK293T 294 bp overlap
ZNF770 1 dataset
Motif DE_12h DE_12h-ZNF770_MA2099.1 8 bp overlap
ZNF8 2 datasets
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
Motif ES_0h ES_0h-ZNF8_MA1718.1 20 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
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