chr13 : 58,843,047 – 58,844,023
976 bp 91 TFs 0 linked genes
This 976 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:58,838,047 – 58,849,023
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
Ahr::Arnt 1 dataset
Motif DE_24h DE_24h-AhrArnt_MA0006.2 5 bp overlap
Ascl2 2 datasets
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Motif DE_36h DE_36h-Ascl2_MA0816.1 10 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CDX2 2 datasets
Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap
Motif DE_36h DE_36h-CDX2_MA0465.3 8 bp overlap
CHD7 1 dataset
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 347 bp overlap
CTCF 84 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 331 bp overlap
ChIP A-673 ENCSR611JJS.CTCF.A-673 265 bp overlap
ChIP BE2C ENCSR000DQD.CTCF.BE2C 209 bp overlap
ChIP C4-2B ENCFF821XVN 732 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 116 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1929.2 31 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 311 bp overlap
Motif ES_0h ES_0h-CTCF_MA0139.2 15 bp overlap
Motif ES_0h ES_0h-CTCF_MA1929.2 31 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 185 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 130 bp overlap
ChIP GM12875 ENCFF081UCQ 257 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 102 bp overlap
ChIP GM23338 ENCFF531QOI 215 bp overlap
ChIP GM23338 ENCFF772DML 166 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 86 bp overlap
ChIP H9 ENCFF152GTF 294 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 328 bp overlap
ChIP HEC-1-B_R1-mutation GSE140868.CTCF.HEC-1-B_R1-mutation 54 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 157 bp overlap
ChIP HEK293 ENCSR000DTW.CTCF.HEK293 126 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 138 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 436 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 234 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 224 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 204 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 204 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 204 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 232 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 245 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 178 bp overlap
ChIP HeLa_dC9Sun-D3AMut_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3AMut_MIR152 150 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 238 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 293 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 185 bp overlap
ChIP Hep-G2 ENCSR000BIE.CTCF.Hep-G2 132 bp overlap
ChIP HepG2 ENCFF348BUL 197 bp overlap
ChIP HepG2 ENCFF757EKU 351 bp overlap
ChIP Jurkat GSE68976.CTCF.Jurkat 190 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 97 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 101 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 204 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 150 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 220 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 182 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF210JUZ 421 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 170 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 129 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 232 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 258 bp overlap
ChIP MCF-7_HYPOXIA GSE78113.CTCF.MCF-7_HYPOXIA 211 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 226 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 236 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 116 bp overlap
ChIP OCI-LY1 ENCFF455ESK 451 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 517 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 244 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 252 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 297 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 148 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 242 bp overlap
ChIP THP-1_Pam3csk-060m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-060m-Flavo-000m 196 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 123 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 114 bp overlap
ChIP chondrocyte ENCFF134ORZ 571 bp overlap
ChIP endodermal cell ENCFF471YCZ 221 bp overlap
ChIP endodermal cell ENCFF471YCZ 309 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 188 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 384 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 163 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 183 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 184 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 203 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 228 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 216 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 232 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 122 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 284 bp overlap
ERF::NHLH1 2 datasets
Motif DE_12h DE_12h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_36h DE_36h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE119057.ESR1.MCF-7 153 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FOXE1 1 dataset
Motif DE_12h DE_12h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Foxn1 1 dataset
Motif DE_12h DE_12h-Foxn1_MA1684.1 6 bp overlap
Foxq1 2 datasets
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 366 bp overlap
ChIP DE DE-GATA4-2 298 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 374 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 397 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 347 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 247 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 424 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 307 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
IKZF1 1 dataset
Motif DE_24h DE_24h-IKZF1_MA1508.2 8 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JMJD1C 1 dataset
ChIP HL-60 GSE63484.JMJD1C.HL-60 142 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 375 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 278 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAF 2 datasets
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
MAF::NFE2 2 datasets
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_36h DE_36h-MAFNFE2_MA0501.2 11 bp overlap
MAFA 2 datasets
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
Motif DE_36h DE_36h-MAFA_MA1521.2 13 bp overlap
MAX::MYC 1 dataset
Motif DE_24h DE_24h-MAXMYC_MA0059.2 10 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER GSE102697.MECOM.SKH1_CEBPA-ER 169 bp overlap
MEF2C 2 datasets
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
Motif DE_36h DE_36h-MEF2C_MA0497.2 11 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
MSC 2 datasets
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
Motif DE_36h DE_36h-MSC_MA0665.1 10 bp overlap
MXI1 1 dataset
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
MYOG 2 datasets
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
Motif DE_36h DE_36h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 237 bp overlap
NFIC::TLX1 2 datasets
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
Motif ES_0h ES_0h-NFICTLX1_MA0119.1 14 bp overlap
NHLH1 2 datasets
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
Motif DE_36h DE_36h-NHLH1_MA0048.3 9 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
NR1I3 1 dataset
Motif DE_24h DE_24h-NR1I3_MA1534.2 8 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 2 datasets
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_36h DE_36h-Nfe2l2_MA0150.3 11 bp overlap
Nr2f6 1 dataset
Motif DE_24h DE_24h-Nr2f6_MA0677.2 13 bp overlap
OSR1 1 dataset
Motif DE_12h DE_12h-OSR1_MA1542.2 8 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PPARA::RXRA 1 dataset
Motif DE_24h DE_24h-PPARARXRA_MA1148.2 17 bp overlap
PPARD 1 dataset
Motif DE_24h DE_24h-PPARD_MA1550.2 14 bp overlap
PRDM1 2 datasets
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Motif DE_36h DE_36h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
Plagl1 3 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
RAD21 7 datasets
ChIP H1 ENCFF698EWO 61 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP Hep-G2 ENCSR000EEG.RAD21.Hep-G2 120 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 111 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 175 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 145 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 191 bp overlap
RUNX1 1 dataset
ChIP SKH1 GSE87283.RUNX1.SKH1 51 bp overlap
RXRB 1 dataset
Motif DE_24h DE_24h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_24h DE_24h-RXRG_MA0856.1 14 bp overlap
Rfx6 2 datasets
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
Rxra 1 dataset
Motif DE_24h DE_24h-Rxra_MA0512.2 14 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 378 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 453 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 468 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 452 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 441 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 586 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 478 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 509 bp overlap
SMC1A 1 dataset
ChIP Hep-G2 GSE76893.SMC1A.Hep-G2 135 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 190 bp overlap
Stat5a 1 dataset
Motif DE_24h DE_24h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 188 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 2 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
TFAP2E 2 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
THAP1 2 datasets
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
Motif ES_0h ES_0h-THAP1_MA0597.3 8 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Thap11 2 datasets
Motif DE_12h DE_12h-Thap11_MA1573.2 14 bp overlap
Motif DE_36h DE_36h-Thap11_MA1573.2 14 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN3 2 datasets
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_36h DE_36h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF213 2 datasets
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF354C 1 dataset
Motif DE_12h DE_12h-ZNF354C_MA0130.1 6 bp overlap
ZNF574 1 dataset
ChIP HepG2 ENCFF206MMY 571 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif ES_0h ES_0h-ZNF667_MA1984.2 11 bp overlap
ZNF680 1 dataset
Motif DE_24h DE_24h-ZNF680_MA1729.2 11 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif DE_24h DE_24h-ZNF701_MA1987.2 17 bp overlap
ZNF75D 2 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_36h DE_36h-ZNF75D_MA1601.2 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF766 2 datasets
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif DE_36h DE_36h-ZNF768_MA1731.2 9 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Zic2 4 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
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