chr13:49,218,368–49,219,071

chr13 : 49,218,368 – 49,219,071

703 bp 51 TFs 6 linked genes

This 703 bp open chromatin element is linked to 6 target genes and is bound by 51 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
MLNR		1.3 kb	Proximal	Proximity
CDADC1		29.2 kb	Distal	Multiome
CAB39L		225.3 kb	Distal	Multiome
SETDB2		225.5 kb	Distal	Multiome
FNDC3A		242.8 kb	Distal	Multiome
PHF11		277.5 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

51 transcription factors

ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 115 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 374 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 641 bp overlap

ChIP H1 ENCFF399KAM 647 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 703 bp overlap

BCOR 4 datasets

ChIP WA01 GSE104690.BCOR.WA01 171 bp overlap

ChIP WA01 GSE104690.BCOR.WA01 166 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 513 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 703 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 651 bp overlap

BRD4 2 datasets

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 702 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 302 bp overlap

ChIP RH5 GSE155861.CHD4.RH5 220 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF262VBH 186 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 123 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 641 bp overlap

ESRRA 1 dataset

ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 284 bp overlap

EZH2 21 datasets

ChIP GM23248 ENCFF404ZHM 566 bp overlap

ChIP H1 ENCFF232NZA 703 bp overlap

ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 385 bp overlap

ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 256 bp overlap

ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 531 bp overlap

ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 206 bp overlap

ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 237 bp overlap

ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 338 bp overlap

ChIP SF8628 GSE94834.EZH2.SF8628 510 bp overlap

ChIP astrocyte ENCFF365JTP 389 bp overlap

ChIP endothelial cell of umbilical vein ENCFF539AKL 331 bp overlap

ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 249 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 513 bp overlap

ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 575 bp overlap

ChIP hepatocyte ENCFF552DZB 633 bp overlap

ChIP keratinocyte ENCFF070STK 611 bp overlap

ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 703 bp overlap

ChIP mammary epithelial cell ENCFF224GAI 491 bp overlap

ChIP myotube ENCSR000ASZ.EZH2.myotube 532 bp overlap

ChIP neural ENCSR511CUH.EZH2.neural 252 bp overlap

ChIP neural progenitor cell ENCFF472NFV 331 bp overlap

EZH2_phosphoT487 3 datasets

ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 53 bp overlap

ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 147 bp overlap

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 703 bp overlap

FOXA1 3 datasets

ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 65 bp overlap

ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 50 bp overlap

ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 169 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 275 bp overlap

JARID2 5 datasets

ChIP AMIPS6 GSE48516.JARID2.AMIPS6 561 bp overlap

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 703 bp overlap

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 653 bp overlap

ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 288 bp overlap

ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 303 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 441 bp overlap

KDM4A 2 datasets

ChIP H1 ENCFF078LED 443 bp overlap

ChIP WA01 ENCSR000AVC.KDM4A.WA01 703 bp overlap

ChIP H1 ENCFF914VQY 100 bp overlap

ChIP WTC11 ENCFF223QFY 420 bp overlap

MYOD1 1 dataset

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 642 bp overlap

NCAPH2 2 datasets

ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 159 bp overlap

ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 284 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 161 bp overlap

Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 522 bp overlap

PCGF2 1 dataset

ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 60 bp overlap

POU5F1 4 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 406 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 654 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 356 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 372 bp overlap

Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap

RBBP5 3 datasets

ChIP H1 ENCFF905HFL 438 bp overlap

ChIP H1 ENCFF905HFL 239 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 306 bp overlap

RNF2 7 datasets

ChIP H1 ENCFF239FFS 212 bp overlap

ChIP H1 ENCFF239FFS 511 bp overlap

ChIP H1 ENCFF239FFS 703 bp overlap

ChIP WA01 ENCSR784VUY.RNF2.WA01 703 bp overlap

ChIP WA01 GSE104690.RNF2.WA01 292 bp overlap

ChIP WA09_heat-shock GSE105028.RNF2.WA09_heat-shock 703 bp overlap

ChIP fibroblast GSE139053.RNF2.fibroblast 190 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 396 bp overlap

SAP30 1 dataset

ChIP WA01 ENCSR000ATR.SAP30.WA01 225 bp overlap

SCRT1 2 datasets

ChIP HEK293 ENCFF513YVP 417 bp overlap

ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 263 bp overlap

SCRT2 1 dataset

ChIP HEK293 ENCFF711QQB 423 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 355 bp overlap

SMAD2_3 1 dataset

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 312 bp overlap

SNAI2 2 datasets

ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 385 bp overlap

ChIP keratinocyte_SNAI2 GSE55421.SNAI2.keratinocyte_SNAI2 266 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap

Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap

SUZ12 2 datasets

ChIP H1 ENCFF881NFR 703 bp overlap

ChIP WA01 ENCSR000ATS.SUZ12.WA01 417 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 131 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 338 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 192 bp overlap

TFDP1 1 dataset

Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap

ChIP GM06170 GSE55727.TP53.GM06170 315 bp overlap

ChIP breast-organoid GSE113909.TP63.breast-organoid 168 bp overlap

ZBTB33 2 datasets

ChIP K-562 ENCSR876GXA.ZBTB33.K-562 484 bp overlap

ChIP K562 ENCFF875HLX 465 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 291 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap