chr13 : 39,378,998 39,379,829
831 bp 56 TFs 0 linked genes
This 831 bp open chromatin element has no linked target genes and is bound by 56 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:39,373,998 – 39,384,829
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 380 bp overlap
BHLHE40 4 datasets
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 405 bp overlap
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 300 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 192 bp overlap
BRD4 3 datasets
ChIP GM15850_DMSO GSE99402.BRD4.GM15850_DMSO 293 bp overlap
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 217 bp overlap
ChIP GM15850_Syn-TEF1 GSE99402.BRD4.GM15850_Syn-TEF1 314 bp overlap
CBFB 1 dataset
ChIP GM12878 ENCSR860UHK.CBFB.GM12878 225 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCSR372GIN.CBX5.GM12878 171 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 117 bp overlap
CREM 1 dataset
ChIP GM12878 ENCFF391UGE 361 bp overlap
CTCF 1 dataset
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 67 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 270 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 58 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 582 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 281 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 649 bp overlap
ChIP DE DE-FOXA2-2 645 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 296 bp overlap
FOXP1 1 dataset
ChIP U2932 ERP010999.FOXP1.U2932 372 bp overlap
GABPA 2 datasets
ChIP GM12878 ENCFF872TWR 401 bp overlap
ChIP GM12878 ENCSR331HPA.GABPA.GM12878 242 bp overlap
GATA1 1 dataset
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 225 bp overlap
GATA3 2 datasets
ChIP CD4_TH2 GSE72266.GATA3.CD4_TH2 185 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 203 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 210 bp overlap
ChIP DE DE-GATA4-1 707 bp overlap
ChIP DE DE-GATA4-2 764 bp overlap
ChIP foregut GSE117136.GATA4.foregut 383 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 263 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 666 bp overlap
ChIP DE DE-GATA6-2 735 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 831 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 831 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 723 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 811 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 748 bp overlap
IRF4 4 datasets
ChIP B-cell GSE142493.IRF4.B-cell 270 bp overlap
ChIP B-cell GSE142493.IRF4.B-cell 192 bp overlap
ChIP GM12878 ENCSR000BGY.IRF4.GM12878 325 bp overlap
ChIP T-cell GSE136853.IRF4.T-cell 192 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 492 bp overlap
JUNB 3 datasets
ChIP GM12878 ENCFF667EJQ 394 bp overlap
ChIP GM12878 ENCFF667EJQ 431 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 434 bp overlap
JUND 1 dataset
ChIP GM12878 ENCSR000EYV.JUND.GM12878 130 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 62 bp overlap
ChIP K562 ENCFF455EEO 52 bp overlap
MEF2A 2 datasets
ChIP GM12878 ENCFF652BHX 291 bp overlap
ChIP GM12878 ENCSR000BKB.MEF2A.GM12878 252 bp overlap
MEF2C 2 datasets
ChIP GM12878 ENCFF473ASZ 285 bp overlap
ChIP GM12878 ENCSR000BNG.MEF2C.GM12878 174 bp overlap
MTA2 2 datasets
ChIP GM12878 ENCFF615CWQ 548 bp overlap
ChIP GM12878 ENCSR293QAR.MTA2.GM12878 287 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 286 bp overlap
NFIC 2 datasets
ChIP GM12878 ENCFF259FWL 541 bp overlap
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 358 bp overlap
PAX5 1 dataset
ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 276 bp overlap
PBX3 3 datasets
ChIP GM12878 ENCFF285BQQ 217 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 92 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 152 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 472 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 546 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 253 bp overlap
RARA 1 dataset
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 187 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 282 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 351 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 800 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 560 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 378 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 536 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 335 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 510 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 481 bp overlap
SMARCA4 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 228 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 59 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 140 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 326 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 388 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 667 bp overlap
SPI1 1 dataset
ChIP GM12891 ENCFF563IUT 241 bp overlap
SRF 2 datasets
ChIP GM12878 ENCFF878IIX 138 bp overlap
ChIP GM12878 ENCSR041XML.SRF.GM12878 356 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 488 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 191 bp overlap
TBX21 4 datasets
ChIP GM12878 ENCFF951HUW 485 bp overlap
ChIP GM12878 ENCFF951HUW 485 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 623 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 130 bp overlap
TCF12 5 datasets
ChIP GM12878 ENCFF433DMU 341 bp overlap
ChIP GM12878 ENCFF433DMU 341 bp overlap
ChIP GM12878 ENCFF506WWB 257 bp overlap
ChIP GM12878 ENCSR725VFL.TCF12.GM12878 190 bp overlap
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 234 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCFF658WIO 297 bp overlap
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 200 bp overlap
TCF4 1 dataset
ChIP GEN2-2 GSE76147.TCF4.GEN2-2 290 bp overlap
TCF7 2 datasets
ChIP GM12878 ENCFF749DPM 365 bp overlap
ChIP GM12878 ENCSR501DKS.TCF7.GM12878 264 bp overlap
ZBED1 1 dataset
ChIP GM12878 ENCSR207PFI.ZBED1.GM12878 229 bp overlap