chr13 : 35,696,904 35,697,838
934 bp 56 TFs 1 linked gene
This 934 bp open chromatin element is linked to LINC00445 and is bound by 56 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC00445 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:35,691,904 – 35,702,838
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
56 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 261 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 192 bp overlap
BRD2 1 dataset
ChIP HUVEC-C GSE60171.BRD2.HUVEC-C 195 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 202 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 202 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 220 bp overlap
EGR1 2 datasets
ChIP fibroblast_DOX-24h GSE134924.EGR1.fibroblast_DOX-24h 136 bp overlap
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 114 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 196 bp overlap
ESR1 4 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 419 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 431 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 228 bp overlap
ESRRA 2 datasets
ChIP MCF-7 ENCSR954WVZ.ESRRA.MCF-7 273 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 328 bp overlap
EZH2 3 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 276 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 364 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 297 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GATA4 2 datasets
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 276 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 267 bp overlap
GATA6 5 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 628 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 934 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 704 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 932 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 701 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HNF4A 1 dataset
ChIP Caco-2_DIFF GSE23436.HNF4A.Caco-2_DIFF 148 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 476 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 311 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 606 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 599 bp overlap
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 199 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 221 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 360 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 149 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 257 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 163 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 328 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 259 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 241 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SIX1 1 dataset
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
SIX2 4 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
ChIP HEK GSE73865.SIX2.HEK 282 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 160 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 225 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 648 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 539 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 610 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 578 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 520 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 513 bp overlap
SMARCA4 8 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 267 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 193 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 225 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 934 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 199 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 204 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 581 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCA4.TTC-1240_empty 452 bp overlap
SMARCC1 9 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 416 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 186 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 506 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 69 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 540 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 159 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 366 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 239 bp overlap
ChIP TTC-1240_empty GSE124903.SMARCC1.TTC-1240_empty 188 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 273 bp overlap
Six4 1 dataset
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 295 bp overlap
TBX18 1 dataset
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 286 bp overlap
TEAD4 7 datasets
ChIP BJ_fibroblast GSE114367.TEAD4.BJ_fibroblast 162 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 228 bp overlap
ChIP PC-9_1DF GSE131687.TEAD4.PC-9_1DF 442 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 473 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 192 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 245 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 235 bp overlap
TP53 2 datasets
ChIP H9 GSE142050.TP53.H9 324 bp overlap
ChIP hESC_DAMAGED GSE39912.TP53.hESC_DAMAGED 204 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 141 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 552 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 298 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 228 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 253 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF331 1 dataset
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF582 1 dataset
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap