chr13 : 34,776,454 – 34,777,170
716 bp 60 TFs 0 linked genes
This 716 bp open chromatin element has no linked target genes and is bound by 60 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:34,771,454 – 34,782,170
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
AR 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 75 bp overlap
ELK1::SREBF2 3 datasets
Motif DE_36h DE_36h-ELK1SREBF2_MA1933.2 15 bp overlap
Motif DE_48h DE_48h-ELK1SREBF2_MA1933.2 15 bp overlap
Motif DE_60h DE_60h-ELK1SREBF2_MA1933.2 15 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 293 bp overlap
ESR1 5 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 101 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 101 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1.MCF-7_Veh_sc 182 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 115 bp overlap
ChIP breast-cancer_3487 GSE126004.ESR1.breast-cancer_3487 146 bp overlap
FOXA1 12 datasets
ChIP MCF-7 GSE72249.FOXA1.MCF-7 69 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 61 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 112 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 157 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 239 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 239 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 198 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 111 bp overlap
ChIP breast-cancer_3487 GSE126004.FOXA1.breast-cancer_3487 155 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 144 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 113 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 208 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 580 bp overlap
ChIP DE DE-FOXA2-2 394 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 121 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 121 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 96 bp overlap
GATA3 8 datasets
ChIP MCF-7 ENCFF352QVM 299 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 156 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 109 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 103 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 101 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 58 bp overlap
ChIP MCF-7_sgScr GSE133072.GATA3.MCF-7_sgScr 121 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 99 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 522 bp overlap
ChIP DE DE-GATA4-2 474 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 716 bp overlap
ChIP DE DE-GATA6-2 467 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 716 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 716 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 716 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 534 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 716 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 716 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 362 bp overlap
HOXA4 3 datasets
Motif DE_36h DE_36h-HOXA4_MA1496.2 7 bp overlap
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXB13 1 dataset
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 102 bp overlap
HOXB4 3 datasets
Motif DE_36h DE_36h-HOXB4_MA1499.2 6 bp overlap
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXC4 3 datasets
Motif DE_36h DE_36h-HOXC4_MA1504.2 6 bp overlap
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 3 datasets
Motif DE_36h DE_36h-HOXD4_MA1507.2 6 bp overlap
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
Hand1::Tcf3 1 dataset
Motif DE_36h DE_36h-Hand1Tcf3_MA0092.2 9 bp overlap
IRF2 3 datasets
Motif DE_36h DE_36h-IRF2_MA0051.2 16 bp overlap
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
ISL2 3 datasets
Motif DE_36h DE_36h-ISL2_MA0914.2 6 bp overlap
Motif DE_48h DE_48h-ISL2_MA0914.2 6 bp overlap
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
Irf1 2 datasets
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 566 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 75 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 326 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 475 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 323 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 494 bp overlap
MED12 2 datasets
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 88 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 57 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MXI1 3 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYB 1 dataset
Motif DE_36h DE_36h-MYB_MA0100.4 6 bp overlap
NANOG 8 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 716 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 359 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 80 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 695 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 250 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 122 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 208 bp overlap
ChIP hESC GSE18292.NANOG.hESC 111 bp overlap
NFIA 2 datasets
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIX 2 datasets
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NR3C1 1 dataset
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 125 bp overlap
Nkx3-1 3 datasets
Motif DE_36h DE_36h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_48h DE_48h-Nkx3-1_MA0124.3 7 bp overlap
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 3 datasets
Motif DE_36h DE_36h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_48h DE_48h-Nkx3-2_MA0122.4 10 bp overlap
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
POU5F1 4 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 143 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 267 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 550 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 58 bp overlap
POU6F1 3 datasets
Motif DE_36h DE_36h-POU6F1_MA1549.2 7 bp overlap
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
Pgr 1 dataset
Motif DE_36h DE_36h-Pgr_MA2323.1 17 bp overlap
Prdm5 1 dataset
Motif DE_36h DE_36h-Prdm5_MA1999.2 11 bp overlap
SIX2 1 dataset
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 74 bp overlap
SMAD2 3 datasets
Motif DE_36h DE_36h-SMAD2_MA1964.2 6 bp overlap
Motif DE_48h DE_48h-SMAD2_MA1964.2 6 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 230 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 419 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 523 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 493 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 465 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 538 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 553 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 406 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 566 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 156 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 226 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 236 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 60 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 655 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 363 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 408 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 302 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 197 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 383 bp overlap
ChIP TTC-1240 GSE124903.SMARCC1.TTC-1240 291 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCC1.TTC-1240_R377H 309 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 157 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 179 bp overlap
SOX21 3 datasets
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Motif DE_48h DE_48h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SP1 1 dataset
Motif DE_36h DE_36h-SP1_MA0079.5 9 bp overlap
SP5 1 dataset
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
STAT1::STAT2 1 dataset
Motif DE_36h DE_36h-STAT1STAT2_MA0517.2 13 bp overlap
STAT3 1 dataset
ChIP breast-cancer_3487 GSE126004.STAT3.breast-cancer_3487 147 bp overlap
Sox1 3 datasets
Motif DE_36h DE_36h-Sox1_MA0870.1 15 bp overlap
Motif DE_48h DE_48h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Spz1 3 datasets
Motif DE_36h DE_36h-Spz1_MA0111.1 11 bp overlap
Motif DE_48h DE_48h-Spz1_MA0111.1 11 bp overlap
Motif DE_60h DE_60h-Spz1_MA0111.1 11 bp overlap
Stat2 1 dataset
Motif DE_36h DE_36h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 242 bp overlap
TEAD4 1 dataset
ChIP ESC S26-ESC-d0-TEAD4-exp1 85 bp overlap
Wt1 1 dataset
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
ZFP42 3 datasets
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
Motif DE_48h DE_48h-ZFP42_MA1651.2 13 bp overlap
Motif DE_60h DE_60h-ZFP42_MA1651.2 13 bp overlap
ZNF263 1 dataset
Motif DE_36h DE_36h-ZNF263_MA0528.3 7 bp overlap
ZNF354C 3 datasets
Motif DE_36h DE_36h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_48h DE_48h-ZNF354C_MA0130.1 6 bp overlap
Motif DE_60h DE_60h-ZNF354C_MA0130.1 6 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 285 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 102 bp overlap
ZNF547 2 datasets
Motif DE_36h DE_36h-ZNF547_MA2334.1 13 bp overlap
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
ZSCAN4 2 datasets
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap
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