chr12 : 101,703,526 101,703,762
236 bp 55 TFs 1 linked gene
This 236 bp open chromatin element is linked to CHPT1 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CHPT1 5.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:101,698,526 – 101,708,762
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
AR 2 datasets
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 111 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 198 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 108 bp overlap
BCL11A 1 dataset
Motif DE_12h DE_12h-BCL11A_MA2324.1 7 bp overlap
BRD4 2 datasets
ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 214 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 193 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CTCF 3 datasets
ChIP H1 ENCFF764RHO 209 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 169 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 99 bp overlap
ESR1 6 datasets
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 70 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 236 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 236 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 231 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 236 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 211 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 144 bp overlap
FOXA1 50 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 236 bp overlap
ChIP 22Rv1 GSE85558.FOXA1.22Rv1 140 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 224 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 166 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 211 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 195 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 160 bp overlap
ChIP HepG2 ENCFF207NVJ 111 bp overlap
ChIP HepG2 ENCFF361KNY 181 bp overlap
ChIP HepG2 ENCFF740VZW 118 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 159 bp overlap
ChIP LNCaP_1F5 GSE30623.FOXA1.LNCaP_1F5 133 bp overlap
ChIP LNCaP_F266S_shFOXA1 GSE128883.FOXA1.LNCaP_F266S_shFOXA1 235 bp overlap
ChIP LNCaP_FENG_shFOXA1_Ethanol GSE128883.FOXA1.LNCaP_FENG_shFOXA1_Ethanol 167 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 125 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 118 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 151 bp overlap
ChIP MCF-7_ARID1A-KO GSE140185.FOXA1.MCF-7_ARID1A-KO 158 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 229 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 165 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 234 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 216 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 217 bp overlap
ChIP MCF-7_JC4695 GSE126004.FOXA1.MCF-7_JC4695 140 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 171 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 236 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 157 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 188 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 236 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 231 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 156 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 195 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 154 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 101 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 175 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 193 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 204 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 167 bp overlap
ChIP T-47D_JC4746 GSE126004.FOXA1.T-47D_JC4746 191 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 214 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 236 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 180 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 145 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 142 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 213 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 228 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 208 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 182 bp overlap
ChIP primary-breast-cancer_B4_DSG GSE114737.FOXA1.primary-breast-cancer_B4_DSG 200 bp overlap
FOXA2 9 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 117 bp overlap
ChIP DE DE-FOXA2-2 179 bp overlap
ChIP HepG2 ENCFF533COJ 77 bp overlap
ChIP HepG2 ENCFF570ABM 236 bp overlap
ChIP HepG2 ENCFF894AYY 230 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 226 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 236 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 236 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 178 bp overlap
FOXA3 1 dataset
ChIP HepG2 ENCFF005KGL 220 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 135 bp overlap
FOXP1 2 datasets
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF823ERM 207 bp overlap
FOXP4 2 datasets
ChIP Hep-G2 ENCSR232LLP.FOXP4.Hep-G2 155 bp overlap
ChIP HepG2 ENCFF462ULY 236 bp overlap
Gli1 1 dataset
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
HDAC1 1 dataset
ChIP MCF-7_ARID1A-KO_4-OHT_clone14 GSE123284.HDAC1.MCF-7_ARID1A-KO_4-OHT_clone14 236 bp overlap
HDAC2 1 dataset
ChIP Hep-G2 ENCSR000BMC.HDAC2.Hep-G2 114 bp overlap
HNF4A 1 dataset
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 163 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 172 bp overlap
MBD3 1 dataset
ChIP HEK293T GSE102945.MBD3.HEK293T 236 bp overlap
MYBL2 1 dataset
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 195 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 217 bp overlap
Mecom 1 dataset
Motif DE_12h DE_12h-Mecom_MA0029.2 11 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYB 1 dataset
Motif DE_12h DE_12h-NFYB_MA0502.3 9 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHG.NR3C1.A-549 123 bp overlap
PATZ1 1 dataset
ChIP HepG2 ENCFF723PFC 236 bp overlap
PHF5A 1 dataset
ChIP Hep-G2 ENCSR191TLD.PHF5A.Hep-G2 106 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 236 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 165 bp overlap
ChIP HepG2 ENCFF939HTZ 236 bp overlap
RBM22 2 datasets
ChIP HepG2 ENCFF292RVQ 122 bp overlap
ChIP HepG2 ENCFF561IAJ 118 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 236 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMARCA4 1 dataset
ChIP MCF-7_ARID1A-KO_clone14 GSE123284.SMARCA4.MCF-7_ARID1A-KO_clone14 196 bp overlap
SP4 1 dataset
ChIP WA01 ENCSR000BQV.SP4.WA01 91 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 80 bp overlap
ZBTB26 1 dataset
Motif DE_12h DE_12h-ZBTB26_MA1579.2 8 bp overlap
ZBTB7B 1 dataset
Motif DE_12h DE_12h-ZBTB7B_MA0694.2 10 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 127 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 110 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF467 1 dataset
ChIP HEK293 GSE76494.ZNF467.HEK293 112 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 153 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 50 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap