chr12 : 97,785,001 – 97,785,343

342 bp 73 TFs 0 linked genes

This 342 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

73 transcription factors

ASCL1 1 dataset

Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 286 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 159 bp overlap

BCL11A 2 datasets

ChIP WA01 ENCSR000BMJ.BCL11A.WA01 213 bp overlap

ChIP WA01 ENCSR000BIP.BCL11A.WA01 311 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 172 bp overlap

CLOCK 1 dataset

ChIP BA10_2 GSE96659.CLOCK.BA10_2 153 bp overlap

Crx 1 dataset

Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap

Dmbx1 1 dataset

Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 152 bp overlap

EP300 2 datasets

ChIP H1 ENCFF927IYK 276 bp overlap

ChIP WA01 ENCSR000BKK.EP300.WA01 226 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

FIGLA 1 dataset

Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 342 bp overlap

ChIP DE DE-FOXA2-2 298 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 238 bp overlap

Foxj3 1 dataset

Motif DE_12h DE_12h-Foxj3_MA0851.2 9 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-2 164 bp overlap

GATA6 2 datasets

ChIP DE DE-GATA6-1 186 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 261 bp overlap

GSC 1 dataset

Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap

GSC2 1 dataset

Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000BNR.HDAC2.WA01 169 bp overlap

IKZF1 1 dataset

Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap

IRF7 1 dataset

Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap

IRF9 1 dataset

Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap

JUN 5 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 294 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 228 bp overlap

ChIP ESC S34-ESC-d0-JUN-exp2 301 bp overlap

ChIP HUES-8 GSE109524.JUN.HUES-8 330 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 305 bp overlap

MAFF 1 dataset

Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 155 bp overlap

MGA::EVX1 1 dataset

Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap

Mafb 1 dataset

Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCFF065NZG 290 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 299 bp overlap

ChIP H1 ENCFF747ZPQ 220 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 342 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 342 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 222 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 342 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 342 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 342 bp overlap

ChIP hESC GSE18292.NANOG.hESC 189 bp overlap

OTX1 1 dataset

Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap

OTX2 1 dataset

ChIP WTC11 ENCFF634NAO 245 bp overlap

PAX3 1 dataset

Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap

PHOX2A 1 dataset

Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

PITX1 1 dataset

Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap

PITX3 1 dataset

Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap

POU5F1 10 datasets

ChIP DE_D1 DED1-OCT4_Batch_II 249 bp overlap

ChIP GM23338 ENCFF333SNB 286 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 342 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 272 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 151 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 306 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 272 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 323 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 342 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 227 bp overlap

PROP1 1 dataset

Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 102 bp overlap

RHOXF1 1 dataset

Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap

RORA 2 datasets

Motif DE_12h DE_12h-RORA_MA0071.1 10 bp overlap

Motif DE_12h DE_12h-RORA_MA0072.2 11 bp overlap

RORB 1 dataset

Motif DE_12h DE_12h-RORB_MA1150.2 10 bp overlap

RORC 1 dataset

Motif DE_12h DE_12h-RORC_MA1151.2 10 bp overlap

SIN3A 1 dataset

ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 162 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 323 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 342 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 140 bp overlap

SMARCA4 4 datasets

ChIP WA09 GSE105028.SMARCA4.WA09 277 bp overlap

ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 286 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 342 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 342 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 229 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 342 bp overlap

SMARCC1 4 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 241 bp overlap

ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 342 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 139 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 342 bp overlap

SNAI1 1 dataset

Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap

SOX2 4 datasets

ChIP H9 GSE46837.SOX2.H9 249 bp overlap

ChIP hESC GSE69479.SOX2.hESC 234 bp overlap

ChIP hESC GSE18292.SOX2.hESC 163 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 338 bp overlap

SP1 2 datasets

ChIP H1 ENCFF263FUH 278 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 303 bp overlap

Sox6 1 dataset

Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap

Stat2 2 datasets

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 260 bp overlap

TCF12 3 datasets

Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap

ChIP H1 ENCFF203EBH 196 bp overlap

ChIP WA01 ENCSR000BIT.TCF12.WA01 262 bp overlap

TCF3 2 datasets

Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap

ChIP NPC GSE154479.TCF3.NPC 333 bp overlap

TEAD4 2 datasets

ChIP ESC S26-ESC-d0-TEAD4-exp1 342 bp overlap

ChIP hESC GSE99202.TEAD4.hESC 218 bp overlap

ZBTB17 1 dataset

Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap

ZEB1 1 dataset

Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap

ZIM3 1 dataset

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 255 bp overlap

ZNF331 1 dataset

Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap

Zfp335 1 dataset

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap