chr12 : 48,986,693 48,987,241
548 bp 65 TFs 1 linked gene
This 548 bp open chromatin element is linked to WNT1 and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
WNT1 8.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:48,981,693 – 48,992,241
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 238 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 523 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 203 bp overlap
ATF1 1 dataset
ChIP HCT-116 GSE130477.ATF1.HCT-116 257 bp overlap
BRD4 4 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 548 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 274 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 548 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 235 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 278 bp overlap
CBX7 4 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 521 bp overlap
ChIP hESC GSE133412.CBX7.hESC 529 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 491 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 526 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 171 bp overlap
CHD1 1 dataset
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 114 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 379 bp overlap
CTCF 3 datasets
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 139 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 267 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 258 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 168 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 423 bp overlap
ERG 2 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 239 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 280 bp overlap
ESR1 7 datasets
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 525 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 361 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 318 bp overlap
ChIP Ishikawa_siNTC-96h GSE129803.ESR1.Ishikawa_siNTC-96h 429 bp overlap
ChIP MCF-7 GSE48930.ESR1.MCF-7 277 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 412 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 231 bp overlap
EZH2 13 datasets
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 294 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 52 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 534 bp overlap
ChIP astrocyte ENCFF365JTP 401 bp overlap
ChIP astrocyte ENCFF365JTP 202 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 130 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 548 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 437 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 161 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 188 bp overlap
ChIP neural progenitor cell ENCFF018MKA 548 bp overlap
ChIP neural progenitor cell ENCFF472NFV 325 bp overlap
ChIP neural progenitor cell ENCFF472NFV 325 bp overlap
FLI1 3 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 199 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 217 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 289 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 243 bp overlap
ChIP DE DE-FOXA2-1 397 bp overlap
GABPA 1 dataset
ChIP MCF-7 GSE72082.GABPA.MCF-7 67 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 260 bp overlap
ChIP DE DE-GATA4-2 430 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 399 bp overlap
ChIP DE DE-GATA6-2 375 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 269 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 285 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 328 bp overlap
JARID2 3 datasets
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 548 bp overlap
ChIP hESC GSE133412.JARID2.hESC 491 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 355 bp overlap
JUN 1 dataset
ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 52 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 266 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 150 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 451 bp overlap
NANOG 1 dataset
ChIP hESC GSE18292.NANOG.hESC 94 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 290 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 146 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 408 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 314 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 331 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 265 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 432 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 313 bp overlap
POU5F1 2 datasets
ChIP SKM-1 GSE93706.POU5F1.SKM-1 213 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 169 bp overlap
PRDM14 1 dataset
ChIP hESC_auxin GSE138674.PRDM14.hESC_auxin 180 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 548 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 548 bp overlap
RNF2 3 datasets
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 368 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 507 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 548 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 307 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 364 bp overlap
RUNX1 2 datasets
ChIP AML GSE111821.RUNX1.AML 211 bp overlap
ChIP Jurkat GSE85524.RUNX1.Jurkat 217 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 326 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 436 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 261 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 183 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 391 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 249 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 477 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 368 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 257 bp overlap
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 278 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 457 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 425 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 532 bp overlap
SOX2 8 datasets
ChIP H9 GSE46837.SOX2.H9 303 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 454 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 548 bp overlap
ChIP RENVM_SHSOX2 GSE49404.SOX2.RENVM_SHSOX2 372 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 357 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 388 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 310 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 331 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 548 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 323 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 246 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 338 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 381 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 265 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 308 bp overlap
SUZ12 11 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 548 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 548 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 548 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 508 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 548 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 341 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 548 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 548 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 185 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 450 bp overlap
ChIP hESC_TKO GSE133412.SUZ12.hESC_TKO 359 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 227 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 257 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 163 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 141 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 257 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 217 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 326 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 337 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 494 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 504 bp overlap
ZNF143 4 datasets
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 76 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 81 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 113 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 122 bp overlap