chr12 : 29,153,389 29,153,753
364 bp 62 TFs 2 linked genes
This 364 bp open chromatin element is linked to FAR2 and ENSG00000257258 and is bound by 62 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
FAR2 4.0 kb Proximal Proximity
ENSG00000257258 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:29,148,389 – 29,158,753
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
62 transcription factors
Source
Cell type
ASCL1 3 datasets
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 135 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 210 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 352 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 220 bp overlap
BRD4 4 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 156 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 200 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 201 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 252 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 111 bp overlap
CEBPB 1 dataset
ChIP monocyte_MACROPHAGE GSE31621.CEBPB.monocyte_MACROPHAGE 100 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 364 bp overlap
CTCF 49 datasets
ChIP 22Rv1 ENCFF466OXN 323 bp overlap
ChIP 22Rv1 ENCFF466OXN 364 bp overlap
ChIP BC-3 GSE135740.CTCF.BC-3 222 bp overlap
ChIP BE2C ENCFF757SRF 230 bp overlap
ChIP DND-41 ENCFF913MRA 248 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 127 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 169 bp overlap
ChIP GM06990 ENCFF471OQT 243 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 172 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 168 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 138 bp overlap
ChIP GM23338 ENCFF531QOI 287 bp overlap
ChIP GM23338 ENCFF772DML 174 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 241 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 209 bp overlap
ChIP H9 ENCFF152GTF 306 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 150 bp overlap
ChIP Kelly_resistant GSE103030.CTCF.Kelly_resistant 173 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 160 bp overlap
ChIP Loucy ENCFF359TVQ 314 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 271 bp overlap
ChIP MCF-7 ENCFF198DQX 195 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 177 bp overlap
ChIP MCF-7 ENCFF494VXA 195 bp overlap
ChIP MCF-7 ENCFF844STM 177 bp overlap
ChIP MCF-7 ENCFF954TUV 186 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 167 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 130 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 255 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 170 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 109 bp overlap
ChIP OCI-LY3 ENCFF939BYJ 304 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 286 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 258 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 233 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 250 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 240 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-240m 158 bp overlap
ChIP THP-1_Pam3csk-030m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-030m-Flavo-000m 150 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 144 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 144 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 205 bp overlap
ChIP endodermal cell ENCFF471YCZ 162 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 133 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 139 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 152 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 166 bp overlap
Cebpa 4 datasets
ChIP BLaER1 ENCFF093OYK 169 bp overlap
ChIP BLaER1 ENCFF346MCV 178 bp overlap
ChIP BLaER1 ENCFF364PUR 253 bp overlap
ChIP BLaER1 ENCFF896HSY 187 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 350 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 303 bp overlap
FIGLA 2 datasets
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 167 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 140 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 142 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 172 bp overlap
KMT2A 4 datasets
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 181 bp overlap
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 131 bp overlap
ChIP IMS-M2_DMSO GSE129636.KMT2A.IMS-M2_DMSO 60 bp overlap
ChIP SEM GSE83671.KMT2A.SEM 185 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 272 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 319 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 229 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYB 3 datasets
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 170 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 212 bp overlap
MYC 3 datasets
ChIP NCI-H128 GSE41105.MYC.NCI-H128 264 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 173 bp overlap
ChIP P493-6_SHCTR GSE60223.MYC.P493-6_SHCTR 176 bp overlap
MYOD1 2 datasets
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 109 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 179 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 146 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 145 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 153 bp overlap
NFXL1 2 datasets
ChIP K-562 ENCSR085DDI.NFXL1.K-562 115 bp overlap
ChIP K562 ENCFF619QDE 201 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 154 bp overlap
NR3C1 1 dataset
ChIP NALM-6 GSE67046.NR3C1.NALM-6 298 bp overlap
PAX5 1 dataset
Motif DE_12h DE_12h-PAX5_MA0014.4 8 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
POLR2A 1 dataset
ChIP H1 ENCFF566JSR 349 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 252 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RAD21 1 dataset
ChIP H1 ENCFF698EWO 197 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 197 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 302 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 176 bp overlap
SCRT1 1 dataset
Motif DE_12h DE_12h-SCRT1_MA0743.3 10 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 106 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 118 bp overlap
ChIP BG03 GSE36578.SMAD3.BG03 95 bp overlap
SMARCA4 7 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 252 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 200 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 155 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 185 bp overlap
ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 179 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 180 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 162 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 169 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 138 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SNAI2 1 dataset
Motif DE_12h DE_12h-SNAI2_MA0745.3 8 bp overlap
SNAI3 1 dataset
Motif DE_12h DE_12h-SNAI3_MA1559.2 9 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 91 bp overlap
SPI1 9 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 262 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 336 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 364 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 197 bp overlap
ChIP HL-60 ENCFF645GBT 240 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 131 bp overlap
ChIP primary-monocyte_18h_donorO GSE128834.SPI1.primary-monocyte_18h_donorO 193 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 121 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 151 bp overlap
SREBP2 1 dataset
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 364 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 140 bp overlap
TBP 1 dataset
ChIP hESC GSE122298.TBP.hESC 91 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF3 2 datasets
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 137 bp overlap
TCF4 1 dataset
Motif DE_12h DE_12h-TCF4_MA0830.3 8 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 128 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZEB1 2 datasets
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF263 3 datasets
ChIP HEK293 ENCFF336CWQ 234 bp overlap
ChIP Hep-G2 ENCSR313MMD.ZNF263.Hep-G2 120 bp overlap
ChIP WTC11 ENCFF893RTM 255 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF711 1 dataset
ChIP HEK293T GSE145160.ZNF711.HEK293T 92 bp overlap
ZNF84 1 dataset
ChIP HEK293T GSE78099.ZNF84.HEK293T 119 bp overlap