chr12 : 23,099,038 23,099,449
411 bp 51 TFs 0 linked genes
This 411 bp open chromatin element has no linked target genes and is bound by 51 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:23,094,038 – 23,104,449
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
51 transcription factors
Source
Cell type
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 246 bp overlap
BRD4 6 datasets
ChIP BE2C GSE80151.BRD4.BE2C 249 bp overlap
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 240 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 61 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 243 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 411 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 249 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 161 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 161 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 276 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 155 bp overlap
CTCF 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 230 bp overlap
CTNNB1 2 datasets
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 353 bp overlap
ChIP hiPSC_TT-neg_D2 GSE132532.CTNNB1.hiPSC_TT-neg_D2 280 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 306 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 177 bp overlap
EZH2 2 datasets
ChIP RH30_DMSO GSE85169.EZH2.RH30_DMSO 221 bp overlap
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 83 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 356 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 183 bp overlap
GATA6 1 dataset
ChIP DE_D1 S41-DE-d1-GATA6-exp2 339 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 202 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 251 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 184 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 166 bp overlap
KLF8 1 dataset
ChIP HEK293 ENCFF929IAJ 114 bp overlap
L3MBTL2 1 dataset
ChIP HEK293T ENCFF482NJV 50 bp overlap
LEF1 1 dataset
ChIP hESC_WNT3A GSE64758.LEF1.hESC_WNT3A 234 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 293 bp overlap
MITF 1 dataset
ChIP 501-mel GSE61965.MITF.501-mel 230 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 65 bp overlap
MYB 2 datasets
ChIP MOLT-3 GSE59657.MYB.MOLT-3 271 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 165 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 254 bp overlap
ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 136 bp overlap
MYCN 6 datasets
ChIP BE2C GSE80151.MYCN.BE2C 208 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 411 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 327 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 411 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 232 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 208 bp overlap
NANOG 3 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 202 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 336 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 411 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 242 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 243 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 411 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 230 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 68 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 226 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 254 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 317 bp overlap
SMARCA4 8 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 120 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 178 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 87 bp overlap
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 195 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 143 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 202 bp overlap
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 363 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 55 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 300 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 276 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 212 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 201 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 296 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 180 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 135 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 166 bp overlap
TFAP2C 3 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 397 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 297 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 276 bp overlap
TWIST1 3 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 199 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 138 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 199 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 150 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 199 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 72 bp overlap