chr1 : 197,914,596 – 197,914,941

345 bp 79 TFs 1 linked gene

This 345 bp open chromatin element is linked to LHX9 and is bound by 79 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LHX9		2.7 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

79 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 76 bp overlap

BCOR 1 dataset

ChIP WA01 GSE104690.BCOR.WA01 222 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD1 2 datasets

ChIP HUES-64 GSE104059.BRD1.HUES-64 135 bp overlap

ChIP HUES-64 GSE104059.BRD1.HUES-64 60 bp overlap

BRD4 1 dataset

ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 68 bp overlap

CBX7 1 dataset

ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 201 bp overlap

CBX8 1 dataset

ChIP K-562 ENCSR000ATW.CBX8.K-562 103 bp overlap

CTCF 2 datasets

ChIP keratinocyte GSE154221.CTCF.keratinocyte 223 bp overlap

ChIP neural progenitor cell ENCFF420RBO 82 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF274GAT 79 bp overlap

EBF1 1 dataset

Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap

EHF 1 dataset

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

ELF1 4 datasets

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ChIP K-562 ENCSR000BMD.ELF1.K-562 163 bp overlap

ChIP K562 ENCFF496AKI 277 bp overlap

ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 330 bp overlap

ELF3 2 datasets

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

ChIP PDAC GSE64557.ELF3.PDAC 334 bp overlap

ELK4 1 dataset

Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap

ETS1 3 datasets

ChIP GM23338 ENCFF701IZH 301 bp overlap

ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 120 bp overlap

ChIP hESC ENCSR534VHI.ETS1.hESC 194 bp overlap

ETV1 4 datasets

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ChIP GIST-T1 GSE106624.ETV1.GIST-T1 248 bp overlap

ChIP GIST-T1 GSE80443.ETV1.GIST-T1 123 bp overlap

ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 76 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap

ETV6 2 datasets

Motif DE_12h DE_12h-ETV6_MA0645.2 9 bp overlap

ChIP WTC11 ENCFF812SCD 345 bp overlap

ETV7 1 dataset

Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap

EZH2 12 datasets

ChIP A673 ENCFF790MVL 83 bp overlap

ChIP A673 ENCFF955JRZ 82 bp overlap

ChIP A673 ENCFF955JRZ 317 bp overlap

ChIP B cell ENCFF803EMO 96 bp overlap

ChIP GM12878 ENCFF635TDF 221 bp overlap

ChIP GM23248 ENCFF404ZHM 164 bp overlap

ChIP GM23338 ENCFF613YON 61 bp overlap

ChIP H1 ENCFF232NZA 345 bp overlap

ChIP RL_CPI169-10d GSE134136.EZH2.RL_CPI169-10d 222 bp overlap

ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 290 bp overlap

ChIP hepatocyte ENCFF118DKH 200 bp overlap

ChIP neural progenitor cell ENCFF472NFV 224 bp overlap

EZH2_phosphoT487 1 dataset

ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 261 bp overlap

Ebf4 1 dataset

Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap

Elf5 2 datasets

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 138 bp overlap

ChIP DE DE-FOXA2-2 143 bp overlap

FOXJ2::ELF1 1 dataset

Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

FOXO1::ELK3 1 dataset

Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap

FOXO1::FLI1 1 dataset

Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap

GABPA 2 datasets

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

ChIP VCaP GSE49091.GABPA.VCaP 169 bp overlap

GATA4 1 dataset

ChIP DE DE-GATA4-1 94 bp overlap

Gli1 1 dataset

Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap

Gli2 1 dataset

Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 75 bp overlap

HNF4A 1 dataset

Motif DE_12h DE_12h-HNF4A_MA0114.5 9 bp overlap

HNF4G 1 dataset

Motif DE_12h DE_12h-HNF4G_MA0484.3 9 bp overlap

IKZF1 1 dataset

ChIP K-562 ENCSR395HWC.IKZF1.K-562 333 bp overlap

IKZF2 2 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

JARID2 2 datasets

ChIP AMIPS8 GSE48516.JARID2.AMIPS8 320 bp overlap

ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 181 bp overlap

KLF1 1 dataset

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

KLF10 1 dataset

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

KLF11 1 dataset

Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF16 1 dataset

Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF9 1 dataset

Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap

NUTM1 1 dataset

ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 159 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PCGF2 1 dataset

ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 101 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 205 bp overlap

PRDM1 1 dataset

Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap

RARA::RXRA 1 dataset

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 1 dataset

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

RNF2 1 dataset

ChIP K-562 ENCSR138FUZ.RNF2.K-562 84 bp overlap

RREB1 1 dataset

Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMARCA4 1 dataset

ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 152 bp overlap

SMARCC1 1 dataset

ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 336 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 169 bp overlap

SP3 1 dataset

Motif DE_12h DE_12h-SP3_MA0746.3 11 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SUZ12 4 datasets

ChIP H1 ENCFF881NFR 345 bp overlap

ChIP WA01 ENCSR000EUQ.SUZ12.WA01 146 bp overlap

ChIP WA01 ENCSR000ATS.SUZ12.WA01 339 bp overlap

ChIP WA01 ENCSR000EUQ.SUZ12.WA01 82 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 128 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Tfcp2l1 1 dataset

Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

ZBTB11 1 dataset

Motif DE_12h DE_12h-ZBTB11_MA2329.1 9 bp overlap

ZBTB7A 1 dataset

Motif DE_12h DE_12h-ZBTB7A_MA0750.3 9 bp overlap

ZNF148 2 datasets

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ChIP K-562 GSE121133.ZNF148.K-562 197 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF184 1 dataset

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

ZNF281 1 dataset

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF680 1 dataset

Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap