chr11 : 20,668,250 20,668,632
382 bp 59 TFs 2 linked genes
This 382 bp open chromatin element is linked to NELL1 and ENSG00000254906 and is bound by 59 transcription factors.
Linked Genes
2 genes
Distance
Gene Expression Dist. to TSS Distance Link type
NELL1 937 bp At TSS Proximity
ENSG00000254906 2.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:20,663,250 – 20,673,632
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 185 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 85 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 167 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 196 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 245 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 102 bp overlap
CDK9 1 dataset
ChIP MV4-11_DMSO GSE82116.CDK9.MV4-11_DMSO 63 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 201 bp overlap
CTCF 2 datasets
ChIP dorsolateral prefrontal cortex ENCFF282ONV 50 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF974AQC 157 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 197 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 351 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 129 bp overlap
EZH2 15 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 258 bp overlap
ChIP A-673 ENCSR179SAO.EZH2.A-673 382 bp overlap
ChIP A673 ENCFF955JRZ 228 bp overlap
ChIP GM23338 ENCFF613YON 64 bp overlap
ChIP H1 ENCFF232NZA 382 bp overlap
ChIP HepG2 ENCFF912EIW 86 bp overlap
ChIP SF8628 GSE94834.EZH2.SF8628 62 bp overlap
ChIP SK-N-MC ENCFF434OHW 74 bp overlap
ChIP SK-N-MC ENCFF674XUJ 73 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 382 bp overlap
ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 56 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 276 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 153 bp overlap
ChIP neural progenitor cell ENCFF018MKA 136 bp overlap
ChIP neural progenitor cell ENCFF472NFV 382 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 65 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 382 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 142 bp overlap
IRF8 1 dataset
ChIP THP-1 GSE123872.IRF8.THP-1 54 bp overlap
ISL2 1 dataset
Motif DE_12h DE_12h-ISL2_MA0914.2 6 bp overlap
JARID2 1 dataset
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 376 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 187 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 230 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 91 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 335 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 114 bp overlap
NR3C1 1 dataset
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 382 bp overlap
Nkx3-1 1 dataset
Motif DE_12h DE_12h-Nkx3-1_MA0124.3 7 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RNF2 4 datasets
ChIP H1 ENCFF239FFS 85 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 365 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 382 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 127 bp overlap
RYBP 2 datasets
ChIP WA01 GSE104690.RYBP.WA01 145 bp overlap
ChIP WA01 GSE104690.RYBP.WA01 168 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 382 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 382 bp overlap
SP1 1 dataset
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 69 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 284 bp overlap
SUZ12 5 datasets
ChIP H1 ENCFF881NFR 382 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 86 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 244 bp overlap
ChIP NT2/D1 ENCFF574SXS 382 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 159 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Vdr 1 dataset
Motif DE_12h DE_12h-Vdr_MA0693.4 7 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
ZBED4 1 dataset
Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF157 1 dataset
Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF320 1 dataset
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF610 1 dataset
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ZNF766 1 dataset
Motif DE_12h DE_12h-ZNF766_MA2098.1 9 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap