chr11 : 6,367,341 – 6,367,799
458 bp 55 TFs 14 linked genes
This 458 bp open chromatin element is linked to 14 target genes and is bound by 55 transcription factors.
Linked Genes
14 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
SMPD1 23.0 kb Distal Multiome
CAVIN3 47.0 kb Distal Multiome
ENSG00000282556 48.3 kb Distal Multiome
APBB1 51.6 kb Distal Multiome
CCKBR 107.7 kb Distal Multiome
ARFIP2 113.8 kb Distal Multiome
TIMM10B 114.0 kb Distal Multiome
DNHD1 129.7 kb Distal Multiome
CNGA4 132.7 kb Distal Multiome
FHIP1B 132.9 kb Distal Multiome
ILK 236.2 kb Distal Multiome
TAF10 244.7 kb Distal Multiome
TPP1 251.9 kb Distal Multiome
DCHS1 288.3 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:6,362,341 – 6,372,799
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 444 bp overlap
CBFA2T3 1 dataset
ChIP K562 ENCFF673OEZ 343 bp overlap
CTBP1 1 dataset
ChIP K562 ENCFF403WPG 458 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 232 bp overlap
Crx 2 datasets
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Dmbx1 2 datasets
Motif DE_36h DE_36h-Dmbx1_MA0883.2 10 bp overlap
Motif DE_48h DE_48h-Dmbx1_MA0883.2 10 bp overlap
ELK1::HOXB13 2 datasets
Motif DE_36h DE_36h-ELK1HOXB13_MA1932.2 15 bp overlap
Motif DE_48h DE_48h-ELK1HOXB13_MA1932.2 15 bp overlap
ERF::HOXB13 2 datasets
Motif DE_36h DE_36h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_48h DE_48h-ERFHOXB13_MA1937.2 13 bp overlap
ETV2::DRGX 2 datasets
Motif DE_36h DE_36h-ETV2DRGX_MA1940.2 12 bp overlap
Motif DE_48h DE_48h-ETV2DRGX_MA1940.2 12 bp overlap
ETV6 2 datasets
Motif DE_36h DE_36h-ETV6_MA0645.2 9 bp overlap
Motif DE_48h DE_48h-ETV6_MA0645.2 9 bp overlap
ETV7 2 datasets
Motif DE_36h DE_36h-ETV7_MA1708.2 9 bp overlap
Motif DE_48h DE_48h-ETV7_MA1708.2 9 bp overlap
FEZF2 3 datasets
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 382 bp overlap
ChIP DE DE-GATA4-2 405 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 294 bp overlap
ChIP DE DE-GATA6-2 336 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 330 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 377 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 313 bp overlap
GSC 2 datasets
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
HOXA10 2 datasets
Motif DE_36h DE_36h-HOXA10_MA0899.2 9 bp overlap
Motif DE_48h DE_48h-HOXA10_MA0899.2 9 bp overlap
HOXD12::ELK1 2 datasets
Motif DE_36h DE_36h-HOXD12ELK1_MA1958.2 13 bp overlap
Motif DE_48h DE_48h-HOXD12ELK1_MA1958.2 13 bp overlap
HOXD9 2 datasets
Motif DE_36h DE_36h-HOXD9_MA0913.3 9 bp overlap
Motif DE_48h DE_48h-HOXD9_MA0913.3 9 bp overlap
Hnf1A 2 datasets
Motif DE_36h DE_36h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_48h DE_48h-Hnf1A_MA1991.2 10 bp overlap
IKZF2 2 datasets
Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 253 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 292 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 298 bp overlap
KLF1 2 datasets
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
KLF2 2 datasets
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
KLF5 2 datasets
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
MAZ 2 datasets
Motif DE_36h DE_36h-MAZ_MA1522.2 8 bp overlap
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
NFIA 1 dataset
Motif DE_48h DE_48h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_48h DE_48h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_48h DE_48h-NFIX_MA0671.2 6 bp overlap
NR2F1 2 datasets
ChIP K562 ENCFF221HJH 176 bp overlap
ChIP K562 ENCFF221HJH 141 bp overlap
OTX1 2 datasets
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
PITX1 2 datasets
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
PRDM9 2 datasets
Motif DE_36h DE_36h-PRDM9_MA1723.2 20 bp overlap
Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap
RHOXF1 2 datasets
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 273 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 346 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 441 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 381 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 331 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 310 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 266 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 332 bp overlap
SPI1 1 dataset
ChIP K562 ENCFF410ORC 205 bp overlap
SPIB 2 datasets
Motif DE_36h DE_36h-SPIB_MA0081.3 13 bp overlap
Motif DE_48h DE_48h-SPIB_MA0081.3 13 bp overlap
Spi1 2 datasets
Motif DE_36h DE_36h-Spi1_MA0080.7 13 bp overlap
Motif DE_48h DE_48h-Spi1_MA0080.7 13 bp overlap
TCF7L1 2 datasets
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap
Wt1 2 datasets
Motif DE_36h DE_36h-Wt1_MA1627.2 10 bp overlap
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
ZFP14 2 datasets
Motif DE_36h DE_36h-ZFP14_MA1972.1 15 bp overlap
Motif DE_48h DE_48h-ZFP14_MA1972.1 15 bp overlap
ZKSCAN5 2 datasets
Motif DE_36h DE_36h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_48h DE_48h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF140 2 datasets
Motif DE_36h DE_36h-ZNF140_MA1589.2 19 bp overlap
Motif DE_48h DE_48h-ZNF140_MA1589.2 19 bp overlap
ZNF148 2 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF213 1 dataset
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 437 bp overlap
ZNF354A 2 datasets
Motif DE_36h DE_36h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
ZNF410 2 datasets
Motif DE_36h DE_36h-ZNF410_MA0752.2 16 bp overlap
Motif DE_48h DE_48h-ZNF410_MA0752.2 16 bp overlap
ZNF682 1 dataset
Motif DE_48h DE_48h-ZNF682_MA1599.2 11 bp overlap
ZNF701 1 dataset
Motif DE_48h DE_48h-ZNF701_MA1987.2 17 bp overlap
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