chr10 : 98,559,915 98,560,656
741 bp 57 TFs 3 linked genes
This 741 bp open chromatin element is linked to HPS1, PYROXD2, and HPSE2 and is bound by 57 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
HPS1 113.4 kb Distal Multiome
PYROXD2 145.1 kb Distal Multiome
HPSE2 183.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr10:98,554,915 – 98,565,656
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 81 bp overlap
ATF4 1 dataset
Motif DE_72h DE_72h-ATF4_MA0833.3 10 bp overlap
ATF7 3 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 60 bp overlap
ChIP HepG2 ENCFF470FKK 69 bp overlap
ChIP MCF-7 ENCFF578WKB 105 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 268 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCFF341ZEM 72 bp overlap
ChIP MCF-7 ENCFF867SAS 71 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 249 bp overlap
DPRX 1 dataset
Motif DE_72h DE_72h-DPRX_MA1480.2 9 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 138 bp overlap
EOMES 2 datasets
Motif DE_72h DE_72h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 309 bp overlap
ESR1 1 dataset
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 216 bp overlap
ETV4 1 dataset
ChIP T-47D GSE129803.ETV4.T-47D 261 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 689 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 257 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 347 bp overlap
ChIP DE DE-FOXA2-2 313 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 279 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 282 bp overlap
ChIP DE DE-GATA4-1 644 bp overlap
ChIP DE DE-GATA4-2 695 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 192 bp overlap
ChIP foregut GSE117136.GATA4.foregut 571 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 589 bp overlap
ChIP DE DE-GATA6-2 741 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 337 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 332 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 571 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 434 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 636 bp overlap
ChIP foregut GSE117136.GATA6.foregut 467 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 454 bp overlap
Gli1 1 dataset
Motif DE_72h DE_72h-Gli1_MA1990.2 10 bp overlap
Gli2 1 dataset
Motif DE_72h DE_72h-Gli2_MA0734.4 9 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 305 bp overlap
INSM1 1 dataset
Motif DE_72h DE_72h-INSM1_MA0155.1 12 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_72h DE_72h-MGA_MA0801.1 8 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 124 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 190 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
Npas4 1 dataset
Motif DE_72h DE_72h-Npas4_MA1995.2 7 bp overlap
PBX3 1 dataset
Motif DE_72h DE_72h-PBX3_MA1114.2 11 bp overlap
PRDM1 1 dataset
Motif DE_72h DE_72h-PRDM1_MA0508.4 7 bp overlap
SIX2 1 dataset
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 535 bp overlap
SMARCA4 1 dataset
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 74 bp overlap
SMARCC1 2 datasets
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCC1.TTC-1240_SMARCB1-FL 741 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 402 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 216 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 376 bp overlap
Stat6 1 dataset
Motif DE_72h DE_72h-Stat6_MA0520.2 10 bp overlap
TBR1 1 dataset
Motif DE_72h DE_72h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_72h DE_72h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_72h DE_72h-TBX15_MA0803.1 8 bp overlap
TBX21 1 dataset
Motif DE_72h DE_72h-TBX21_MA0690.3 10 bp overlap
TBX4 1 dataset
Motif DE_72h DE_72h-TBX4_MA0806.1 8 bp overlap
TFCP2 1 dataset
Motif DE_72h DE_72h-TFCP2_MA1968.2 9 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCSR909HMT.ZEB1.HEK293 86 bp overlap
ZFP69B 2 datasets
ChIP HEK293 ENCFF942LFP 150 bp overlap
ChIP HEK293 ENCSR381VYR.ZFP69B.HEK293 191 bp overlap
ZIC1 1 dataset
Motif DE_72h DE_72h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_72h DE_72h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_72h DE_72h-ZIC5_MA1584.2 15 bp overlap
ZNF300 1 dataset
ChIP HEK293T GSE78099.ZNF300.HEK293T 144 bp overlap
ZNF317 2 datasets
Motif DE_72h DE_72h-ZNF317_MA1593.2 8 bp overlap
ChIP HEK293 GSE76494.ZNF317.HEK293 61 bp overlap
ZNF354A 1 dataset
Motif DE_72h DE_72h-ZNF354A_MA1978.2 20 bp overlap
ZNF528 1 dataset
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap