chr10 : 5,511,294 – 5,511,828

534 bp 65 TFs 0 linked genes

This 534 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

65 transcription factors

APC 1 dataset

ChIP HCT-116 GSE103894.APC.HCT-116 299 bp overlap

AR 3 datasets

ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 153 bp overlap

ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 228 bp overlap

ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 508 bp overlap

BHLHE22 1 dataset

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

BRD3 3 datasets

ChIP K-562_DMSO GSE138084.BRD3.K-562_DMSO 238 bp overlap

ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 294 bp overlap

ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 290 bp overlap

BRD4 4 datasets

ChIP K-562_DMSO GSE138084.BRD4.K-562_DMSO 239 bp overlap

ChIP K-562_iBET-BD2 GSE138084.BRD4.K-562_iBET-BD2 118 bp overlap

ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 367 bp overlap

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 534 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 225 bp overlap

CDK9 1 dataset

ChIP HCT-116 GSE72622.CDK9.HCT-116 295 bp overlap

EGR1 6 datasets

ChIP A-375 GSE116190.EGR1.A-375 203 bp overlap

Motif DE_12h DE_12h-EGR1_MA0162.5 10 bp overlap

ChIP K-562 ENCSR024CNP.EGR1.K-562 185 bp overlap

ChIP K-562 ENCSR000BNE.EGR1.K-562 129 bp overlap

ChIP K562 ENCFF006PJY 245 bp overlap

ChIP K562 ENCFF895KGN 385 bp overlap

EGR2 1 dataset

Motif DE_12h DE_12h-EGR2_MA0472.2 11 bp overlap

EGR3 1 dataset

Motif DE_12h DE_12h-EGR3_MA0732.2 11 bp overlap

EGR4 1 dataset

Motif DE_12h DE_12h-EGR4_MA0733.2 11 bp overlap

EOMES 1 dataset

Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap

ESR1 2 datasets

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 198 bp overlap

ChIP breast_tumor_Male_9 GSE104399.ESR1.breast_tumor_Male_9 82 bp overlap

FOSL1 1 dataset

ChIP MNNG-HOS GSE74230.FOSL1.MNNG-HOS 172 bp overlap

FOXA1 3 datasets

ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 345 bp overlap

ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 130 bp overlap

ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 88 bp overlap

GATA6 4 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 461 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 323 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 449 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 469 bp overlap

HEXIM1 1 dataset

ChIP HCT-116 GSE72622.HEXIM1.HCT-116 363 bp overlap

JUN 1 dataset

ChIP MDA-BoM-1833 GSE112444.JUN.MDA-BoM-1833 287 bp overlap

KDM5B 1 dataset

ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 198 bp overlap

KDM6B 1 dataset

ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 181 bp overlap

KLF1 4 datasets

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

ChIP HEK293 ENCFF159QSW 425 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 314 bp overlap

ChIP HEK293 GSE76494.KLF1.HEK293 156 bp overlap

KLF15 1 dataset

Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF3 2 datasets

Motif DE_12h DE_12h-KLF3_MA1516.2 10 bp overlap

ChIP keratinocyte GSE140991.KLF3.keratinocyte 270 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF7 1 dataset

Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap

MGA 1 dataset

Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap

MLLT1 1 dataset

ChIP K-562 ENCSR107GRP.MLLT1.K-562 249 bp overlap

NFYA 1 dataset

Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap

NFYC 1 dataset

Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap

NR3C1 2 datasets

ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 92 bp overlap

ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 50 bp overlap

NUTM1 1 dataset

ChIP NMC24335 GSE96775.NUTM1.NMC24335 71 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Olig2 1 dataset

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

PATZ1 2 datasets

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

PBX3 1 dataset

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

PGR 1 dataset

ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 66 bp overlap

PLAG1 1 dataset

ChIP K-562 GSE111469.PLAG1.K-562 192 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 527 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 483 bp overlap

RELA 1 dataset

ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 69 bp overlap

RXR 1 dataset

ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 154 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 534 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 534 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 496 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 534 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 534 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 509 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 457 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 250 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 163 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SREBP2 1 dataset

ChIP HCC70 GSE126380.SREBP2.HCC70 288 bp overlap

T 1 dataset

ChIP H9_MESODERM GSE60606.T.H9_MESODERM 210 bp overlap

TARDBP 1 dataset

ChIP K-562 ENCSR429XTR.TARDBP.K-562 140 bp overlap

TBX1 1 dataset

Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap

TBX15 1 dataset

Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap

TBX5 1 dataset

Motif DE_12h DE_12h-TBX5_MA0807.1 8 bp overlap

TP63 1 dataset

ChIP keratinocyte GSE33571.TP63.keratinocyte 171 bp overlap

Tcf12 1 dataset

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Twist2 1 dataset

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

ZBED4 1 dataset

Motif DE_12h DE_12h-ZBED4_MA2328.1 10 bp overlap

ZBTB33 3 datasets

ChIP K-562 ENCSR876GXA.ZBTB33.K-562 534 bp overlap

ChIP K562 ENCFF427SDV 311 bp overlap

ChIP K562 ENCFF875HLX 443 bp overlap

ZKSCAN1 2 datasets

ChIP K-562 ENCSR882ERE.ZKSCAN1.K-562 137 bp overlap

ChIP K562 ENCFF977CBA 212 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF184 1 dataset

Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap

ZNF263 1 dataset

ChIP K-562 ENCSR000EWN.ZNF263.K-562 240 bp overlap

ZNF3 1 dataset

ChIP K-562 ENCSR195QFV.ZNF3.K-562 188 bp overlap

ZNF669 1 dataset

Motif DE_12h DE_12h-ZNF669_MA1985.1 15 bp overlap

Zfx 1 dataset

Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap