Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

BRD4 4 datasets

ChIP BE2C GSE80151.BRD4.BE2C 112 bp overlap

ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 112 bp overlap

ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 276 bp overlap

ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 306 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF460KDD 197 bp overlap

EZH2 1 dataset

ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 155 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 126 bp overlap

GATA6 3 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 343 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 359 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 259 bp overlap

GRHL1 2 datasets

Motif DE_12h DE_12h-GRHL1_MA0647.2 10 bp overlap

Motif ES_0h ES_0h-GRHL1_MA0647.2 10 bp overlap

HAND2 2 datasets

ChIP Kelly GSE94822.HAND2.Kelly 237 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 318 bp overlap

IRF4 1 dataset

Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap

IRF8 1 dataset

Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 234 bp overlap

Isl1 2 datasets

Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap

Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap

JUN 1 dataset

ChIP HUES-8 GSE109524.JUN.HUES-8 332 bp overlap

KDM3A 1 dataset

ChIP 22Rv1_pLKO GSE109748.KDM3A.22Rv1_pLKO 75 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 108 bp overlap

MEIS1 2 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MYCN 1 dataset

ChIP NB-1643 GSE138295.MYCN.NB-1643 227 bp overlap

NANOG 5 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 409 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 225 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 147 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 258 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 262 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 1 dataset

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 1 dataset

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

POU2F1::SOX2 2 datasets

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 15 datasets

ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap

Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 245 bp overlap

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP GM23338 ENCFF333SNB 294 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 455 bp overlap

ChIP NCCIT GSE36134.POU5F1.NCCIT 412 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 462 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 200 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 114 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 441 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 378 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 251 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 238 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 237 bp overlap

Pou5f1::Sox2 2 datasets

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 206 bp overlap

RCOR1 1 dataset

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 235 bp overlap

REST 1 dataset

ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 148 bp overlap

Rarb 1 dataset

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

SMAD2-3 1 dataset

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 270 bp overlap

SMAD2_3 1 dataset

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 285 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 215 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 329 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 174 bp overlap

SMARCC1 4 datasets

ChIP DE_D1 S15-DE-d1-BAF155-exp1 206 bp overlap

ChIP ESC S25-ESC-d0-BAF155-exp1 239 bp overlap

ChIP hiPSC GSE124903.SMARCC1.hiPSC 274 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 254 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP hESC GSE18292.SOX2.hESC 123 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 315 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 230 bp overlap

SREBF1 2 datasets

Motif DE_12h DE_12h-SREBF1_MA0595.1 10 bp overlap

Motif ES_0h ES_0h-SREBF1_MA0595.1 10 bp overlap

SREBF2 2 datasets

Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap

Motif ES_0h ES_0h-SREBF2_MA0596.1 10 bp overlap

SUZ12 1 dataset

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 445 bp overlap

Stat2 2 datasets

Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap

Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 193 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 290 bp overlap

TCF4 1 dataset

ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 182 bp overlap

TFCP2 2 datasets

Motif DE_12h DE_12h-TFCP2_MA1968.2 9 bp overlap

Motif ES_0h ES_0h-TFCP2_MA1968.2 9 bp overlap

TP73 2 datasets

Motif DE_12h DE_12h-TP73_MA0861.2 16 bp overlap

Motif ES_0h ES_0h-TP73_MA0861.2 16 bp overlap

TRIM28 1 dataset

ChIP hESC GSE115387.TRIM28.hESC 180 bp overlap

TWIST1 2 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 337 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 337 bp overlap

ZIM3 2 datasets

Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap

Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap

ZNF114 1 dataset

ChIP GM23338 ENCFF631OSW 323 bp overlap

ZNF189 1 dataset

Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap

ZNF257 1 dataset

Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 102 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 301 bp overlap

Zic1::Zic2 2 datasets

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 2 datasets

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap

Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap

Gene	Dist. to TSS	Distance	Link type
TOR1AIP2	89.3 kb	Distal	Multiome
TOR1AIP1	94.2 kb	Distal	Multiome
CEP350	166.3 kb	Distal	Multiome
TDRD5	196.9 kb	Distal	Multiome

Genome Browser