chr9:69,823,108–69,824,042

chr9 : 69,823,108 – 69,824,042

934 bp 59 TFs 6 linked genes

This 934 bp open chromatin element is linked to 6 target genes and is bound by 59 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
CFAP95		2.3 kb	Proximal	Proximity
CFAP95-DT		2.3 kb	Proximal	Proximity
PTAR1		63.6 kb	Distal	Multiome
APBA1		151.3 kb	Distal	Multiome
MAMDC2		220.2 kb	Distal	Multiome
MAMDC2-AS1		290.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

59 transcription factors

ATF4 3 datasets

Motif DE_36h DE_36h-ATF4_MA0833.3 10 bp overlap

Motif DE_60h DE_60h-ATF4_MA0833.3 10 bp overlap

Motif DE_72h DE_72h-ATF4_MA0833.3 10 bp overlap

BCL6B 1 dataset

Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap

BRD4 2 datasets

ChIP HAP1 GSE108387.BRD4.HAP1 455 bp overlap

ChIP HAP1 GSE108387.BRD4.HAP1 69 bp overlap

CEBPA 1 dataset

Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap

CEBPD 1 dataset

Motif DE_60h DE_60h-CEBPD_MA0836.3 8 bp overlap

CEBPG 3 datasets

Motif DE_36h DE_36h-CEBPG_MA1636.2 10 bp overlap

Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap

Motif DE_72h DE_72h-CEBPG_MA1636.2 10 bp overlap

ChIP CD14-positive monocyte ENCFF087XLR 93 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF335XTP 251 bp overlap

Motif DE_60h DE_60h-DPRX_MA1480.2 9 bp overlap

DUX4 4 datasets

Motif DE_36h DE_36h-DUX4_MA0468.1 11 bp overlap

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap

Motif DE_72h DE_72h-DUX4_MA0468.1 11 bp overlap

DUXA 3 datasets

Motif DE_36h DE_36h-DUXA_MA0884.2 13 bp overlap

Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap

Motif DE_72h DE_72h-DUXA_MA0884.2 13 bp overlap

Motif DE_36h DE_36h-Dux_MA0611.3 11 bp overlap

Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap

Motif DE_72h DE_72h-Dux_MA0611.3 11 bp overlap

Motif DE_60h DE_60h-E2F8_MA0865.3 9 bp overlap

FOXA2 2 datasets

ChIP DE DE-FOXA2-1 849 bp overlap

ChIP DE DE-FOXA2-2 622 bp overlap

GATA2 1 dataset

Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap

GATA4 4 datasets

ChIP DE DE-GATA4-1 934 bp overlap

ChIP DE DE-GATA4-2 934 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap

GATA5 1 dataset

Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 934 bp overlap

ChIP DE DE-GATA6-2 934 bp overlap

Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 793 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 810 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 829 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 934 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 841 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 779 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 525 bp overlap

Gata3 1 dataset

Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap

HOXB13 1 dataset

Motif DE_60h DE_60h-HOXB13_MA0901.3 9 bp overlap

Hoxa13 1 dataset

Motif DE_60h DE_60h-Hoxa13_MA0650.4 8 bp overlap

Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap

Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap

Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 388 bp overlap

Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap

Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap

Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap

Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap

Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap

MEIS1 3 datasets

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap

MXI1 3 datasets

Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap

Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap

Motif DE_72h DE_72h-MXI1_MA1108.3 6 bp overlap

Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap

Motif DE_72h DE_72h-MYB_MA0100.4 6 bp overlap

ChIP U2OS_SHMYC GSE77356.MYC.U2OS_SHMYC 93 bp overlap

MYF6 2 datasets

Motif DE_60h DE_60h-MYF6_MA0667.1 10 bp overlap

Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap

Mecom 1 dataset

Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap

NANOG 2 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 121 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 66 bp overlap

NFYA 3 datasets

Motif DE_36h DE_36h-NFYA_MA0060.4 8 bp overlap

Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap

Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap

NFYC 3 datasets

Motif DE_36h DE_36h-NFYC_MA1644.2 7 bp overlap

Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap

Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap

NR1D2 3 datasets

Motif DE_36h DE_36h-NR1D2_MA1532.2 15 bp overlap

Motif DE_60h DE_60h-NR1D2_MA1532.2 15 bp overlap

Motif DE_72h DE_72h-NR1D2_MA1532.2 15 bp overlap

NR2F1 2 datasets

Motif DE_60h DE_60h-NR2F1_MA0017.3 12 bp overlap

Motif DE_72h DE_72h-NR2F1_MA0017.3 12 bp overlap

Nfat5 1 dataset

Motif DE_60h DE_60h-Nfat5_MA0606.3 8 bp overlap

Nfatc2 1 dataset

Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap

PROP1 1 dataset

Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap

RARA 2 datasets

Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap

Motif DE_72h DE_72h-RARA_MA0730.1 17 bp overlap

RBM25 1 dataset

ChIP K-562 ENCSR791OZM.RBM25.K-562 215 bp overlap

Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap

Rarb 2 datasets

Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap

Motif DE_72h DE_72h-Rarb_MA0858.1 17 bp overlap

SETDB1 4 datasets

ChIP HEK293 ENCFF676PLV 377 bp overlap

ChIP HEK293 ENCFF676PLV 587 bp overlap

ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 187 bp overlap

ChIP U2OS ENCSR000EYD.SETDB1.U2OS 171 bp overlap

SMAD2_3 2 datasets

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 455 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 439 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 416 bp overlap

Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap

Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap

Motif DE_72h DE_72h-SP5_MA1965.2 6 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 348 bp overlap

Motif DE_60h DE_60h-TBP_MA0108.3 7 bp overlap

TRPS1 1 dataset

Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap

Thap11 1 dataset

Motif DE_60h DE_60h-Thap11_MA1573.2 14 bp overlap

ZMYM3 1 dataset

ChIP K-562 ENCSR102KIN.ZMYM3.K-562 250 bp overlap

ZNF16 1 dataset

Motif DE_60h DE_60h-ZNF16_MA1654.2 21 bp overlap

ZNF528 1 dataset

Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap

ZNF558 1 dataset

Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap

ZNF707 1 dataset

Motif DE_60h DE_60h-ZNF707_MA1715.1 15 bp overlap

ZNF784 3 datasets

Motif DE_36h DE_36h-ZNF784_MA1717.2 8 bp overlap

Motif DE_60h DE_60h-ZNF784_MA1717.2 8 bp overlap

Motif DE_72h DE_72h-ZNF784_MA1717.2 8 bp overlap