chr9 : 16,524,886 – 16,525,208

322 bp 88 TFs 0 linked genes

This 322 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

88 transcription factors

BARX1 1 dataset

Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap

BARX2 1 dataset

Motif DE_48h DE_48h-BARX2_MA1471.2 9 bp overlap

BHLHE22 3 datasets

Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap

Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap

Motif DE_48h DE_48h-BHLHE22_MA1635.2 6 bp overlap

BSX 1 dataset

Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap

CTCF 1 dataset

ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 233 bp overlap

DLX1 1 dataset

Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap

DLX6 1 dataset

Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap

DUX4 1 dataset

ChIP WA01 GSE94322.DUX4.WA01 86 bp overlap

Dlx3 1 dataset

Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap

Dlx4 1 dataset

Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 185 bp overlap

EZH2 1 dataset

ChIP THP-1 GSE135024.EZH2.THP-1 149 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 308 bp overlap

ChIP DE DE-GATA4-2 322 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 270 bp overlap

GATA6 9 datasets

ChIP DE DE-GATA6-1 322 bp overlap

ChIP DE DE-GATA6-2 322 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 322 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 322 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 322 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 322 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 322 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 322 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 277 bp overlap

GBX2 1 dataset

Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap

HESX1 1 dataset

Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap

HOXA7 1 dataset

Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap

IRF3 1 dataset

Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap

JUN 2 datasets

ChIP DE_D1 S40-DE-d1-JUN-exp2 206 bp overlap

ChIP DE_D2 S02-DE-d2-JUN-exp1 322 bp overlap

KLF10 1 dataset

Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap

KLF12 1 dataset

Motif DE_48h DE_48h-KLF12_MA0742.2 9 bp overlap

KLF14 1 dataset

Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap

KLF16 1 dataset

Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap

KLF5 1 dataset

Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap

LBX2 1 dataset

Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap

LHX2 1 dataset

Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap

MAZ 1 dataset

Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap

MEIS1 3 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap

MSX1 1 dataset

Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap

MSX2 1 dataset

Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap

Msx3 1 dataset

Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 277 bp overlap

NKX2-2 1 dataset

Motif DE_48h DE_48h-NKX2-2_MA1645.2 8 bp overlap

NR1H2::RXRA 2 datasets

Motif DE_12h DE_12h-NR1H2RXRA_MA0115.1 17 bp overlap

Motif DE_48h DE_48h-NR1H2RXRA_MA0115.1 17 bp overlap

NR2C1 2 datasets

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap

NR2C2 2 datasets

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap

NR2F1 2 datasets

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Motif DE_48h DE_48h-NR2F1_MA0017.3 12 bp overlap

NR2F2 2 datasets

Motif DE_12h DE_12h-NR2F2_MA1111.2 7 bp overlap

Motif DE_48h DE_48h-NR2F2_MA1111.2 7 bp overlap

NR4A1 3 datasets

Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap

Motif DE_48h DE_48h-NR4A1_MA1112.3 8 bp overlap

ChIP MOLM-14_DHE GSE124963.NR4A1.MOLM-14_DHE 184 bp overlap

NR4A2 2 datasets

Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap

Motif DE_48h DE_48h-NR4A2_MA0160.3 8 bp overlap

Neurod2 3 datasets

Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap

Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap

Motif DE_48h DE_48h-Neurod2_MA1993.2 6 bp overlap

Nkx2-1 2 datasets

Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap

Motif DE_48h DE_48h-Nkx2-1_MA1994.2 7 bp overlap

Nobox 1 dataset

Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap

Nr1H2 2 datasets

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 2 datasets

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 2 datasets

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap

Nr2e1 2 datasets

Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap

Motif DE_48h DE_48h-Nr2e1_MA0676.1 9 bp overlap

Olig2 3 datasets

Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap

Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap

Motif DE_48h DE_48h-Olig2_MA1997.2 6 bp overlap

PATZ1 1 dataset

Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap

PBX3 3 datasets

Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap

Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap

Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap

PKNOX1 4 datasets

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

Motif DE_36h DE_36h-PKNOX1_MA0782.3 10 bp overlap

Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap

ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 239 bp overlap

PLAG1 1 dataset

Motif DE_48h DE_48h-PLAG1_MA0163.1 14 bp overlap

PRDM9 1 dataset

Motif DE_48h DE_48h-PRDM9_MA1723.2 20 bp overlap

Ppara 2 datasets

Motif DE_12h DE_12h-Ppara_MA2338.1 7 bp overlap

Motif DE_48h DE_48h-Ppara_MA2338.1 7 bp overlap

RAD21 1 dataset

ChIP H1 ENCFF698EWO 216 bp overlap

RARA 2 datasets

Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap

Motif DE_48h DE_48h-RARA_MA0729.1 18 bp overlap

RAX 1 dataset

Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap

RREB1 1 dataset

Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap

Rarb 2 datasets

Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap

Motif DE_48h DE_48h-Rarb_MA0857.1 16 bp overlap

Rarg 2 datasets

Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap

Motif DE_48h DE_48h-Rarg_MA0859.2 15 bp overlap

SMAD2 1 dataset

ChIP endoderm GSE29422.SMAD2.endoderm 182 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 322 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 322 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 322 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 322 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 322 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 322 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 322 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 322 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 207 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 229 bp overlap

SMARCA4 1 dataset

ChIP hiPSC GSE124903.SMARCA4.hiPSC 275 bp overlap

SOX17 1 dataset

ChIP DE_D2 DED2-SOX17_Batch_II 261 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 322 bp overlap

SP1 1 dataset

Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap

SP2 1 dataset

Motif DE_48h DE_48h-SP2_MA0516.3 9 bp overlap

SP4 1 dataset

Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap

SP5 3 datasets

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap

SP8 1 dataset

Motif DE_48h DE_48h-SP8_MA0747.2 11 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 230 bp overlap

TBX18 2 datasets

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap

TCF7L1 2 datasets

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

Motif DE_48h DE_48h-TCF7L1_MA1421.1 12 bp overlap

Tcf12 3 datasets

Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap

Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap

Motif DE_48h DE_48h-Tcf12_MA0521.3 6 bp overlap

Twist2 3 datasets

Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap

Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap

Motif DE_48h DE_48h-Twist2_MA0633.3 6 bp overlap

VEZF1 1 dataset

Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap

Wt1 1 dataset

Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap

ZBTB6 2 datasets

Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap

Motif DE_48h DE_48h-ZBTB6_MA1581.2 9 bp overlap

ZNF121 1 dataset

ChIP WTC11 ENCFF291API 181 bp overlap

ZNF148 1 dataset

Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap

ZNF263 2 datasets

Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap

Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap

ZNF281 2 datasets

Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap

ZNF460 2 datasets

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap

ZNF707 2 datasets

Motif DE_36h DE_36h-ZNF707_MA1715.1 15 bp overlap

Motif DE_48h DE_48h-ZNF707_MA1715.1 15 bp overlap

ZNF740 1 dataset

Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap