chr9 : 13,596,454 13,596,900
446 bp 89 TFs 0 linked genes
This 446 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:13,591,454 – 13,601,900
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 166 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 352 bp overlap
BRD4 1 dataset
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 308 bp overlap
CEBPA 1 dataset
Motif ES_0h ES_0h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif ES_0h ES_0h-CEBPD_MA0836.3 8 bp overlap
CTCF 5 datasets
ChIP BL41 GSE31485.CTCF.BL41 124 bp overlap
ChIP GM23338 ENCFF531QOI 400 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 194 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 279 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF364PUR 251 bp overlap
ChIP BLaER1 ENCFF896HSY 281 bp overlap
DMRTA2 1 dataset
Motif ES_0h ES_0h-DMRTA2_MA1478.2 6 bp overlap
DPF2 1 dataset
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 260 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 190 bp overlap
EBF1 1 dataset
Motif ES_0h ES_0h-EBF1_MA0154.5 11 bp overlap
EBF3 1 dataset
Motif ES_0h ES_0h-EBF3_MA1637.2 9 bp overlap
EHF 2 datasets
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
Motif ES_0h ES_0h-EHF_MA0598.4 9 bp overlap
ELF1 3 datasets
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
Motif ES_0h ES_0h-ELF1_MA0473.4 9 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 233 bp overlap
ELF3 2 datasets
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
Motif ES_0h ES_0h-ELF3_MA0640.3 9 bp overlap
ELK4 2 datasets
Motif DE_12h DE_12h-ELK4_MA0076.3 9 bp overlap
Motif ES_0h ES_0h-ELK4_MA0076.3 9 bp overlap
EP300 1 dataset
ChIP H1 ENCFF927IYK 263 bp overlap
ERF::FOXI1 2 datasets
Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
ETV1 2 datasets
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 321 bp overlap
EZH2 4 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 330 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 236 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 158 bp overlap
ChIP fibroblast_DERMAL ENCSR000ASE.EZH2.fibroblast_DERMAL 258 bp overlap
Ebf2 1 dataset
Motif ES_0h ES_0h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif ES_0h ES_0h-Ebf4_MA2122.1 11 bp overlap
Erg 2 datasets
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
Motif ES_0h ES_0h-Erg_MA0474.4 10 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
FLI1 1 dataset
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 183 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 213 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 181 bp overlap
FOXJ2::ELF1 2 datasets
Motif DE_12h DE_12h-FOXJ2ELF1_MA1952.2 11 bp overlap
Motif ES_0h ES_0h-FOXJ2ELF1_MA1952.2 11 bp overlap
FOXO1::ELF1 2 datasets
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_12h DE_12h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK3_MA1955.2 13 bp overlap
GABPA 2 datasets
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
Motif ES_0h ES_0h-GABPA_MA0062.4 10 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 219 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 353 bp overlap
HLF 1 dataset
Motif ES_0h ES_0h-HLF_MA0043.4 9 bp overlap
Hmx2 1 dataset
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IRF4 1 dataset
Motif ES_0h ES_0h-IRF4_MA1419.2 14 bp overlap
Ikzf3 2 datasets
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 442 bp overlap
MED1 5 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 182 bp overlap
ChIP hMSC-TERT4_adipocyte-D14 GSE113253.MED1.hMSC-TERT4_adipocyte-D14 255 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 304 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 283 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 76 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 446 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 243 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 137 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 433 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 412 bp overlap
ChIP hESC GSE18292.NANOG.hESC 97 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NFATC4 2 datasets
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
Motif ES_0h ES_0h-NFATC4_MA1525.3 9 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 307 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 225 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 277 bp overlap
NKX2-2 1 dataset
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-5 1 dataset
Motif ES_0h ES_0h-NKX2-5_MA0063.3 7 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 149 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 446 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 193 bp overlap
POU5F1 7 datasets
ChIP BG03 GSE21614.POU5F1.BG03 231 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 446 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 192 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 216 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 332 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 289 bp overlap
RAD21 8 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 159 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 293 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 358 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 180 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 187 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 237 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap
RELB 1 dataset
Motif ES_0h ES_0h-RELB_MA1117.2 7 bp overlap
RUNX1 1 dataset
ChIP 697 GSE138031.RUNX1.697 177 bp overlap
Rarb 1 dataset
Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 209 bp overlap
SIN3A 1 dataset
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 137 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 183 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 256 bp overlap
ChIP NPC_R1159Q_ab GSE122631.SMARCA2.NPC_R1159Q_ab 199 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 145 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 427 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 341 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 298 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 445 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 223 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 225 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 286 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 446 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 427 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 235 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
STAT3 1 dataset
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 230 bp overlap
Spz1 1 dataset
Motif ES_0h ES_0h-Spz1_MA0111.1 11 bp overlap
Stat5a 2 datasets
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Motif ES_0h ES_0h-Stat5a_MA1624.2 9 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 166 bp overlap
TFAP2A 1 dataset
Motif ES_0h ES_0h-TFAP2A_MA0810.2 11 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 315 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 239 bp overlap
ZNF274 1 dataset
Motif ES_0h ES_0h-ZNF274_MA1592.2 12 bp overlap
ZNF384 2 datasets
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
Motif ES_0h ES_0h-ZNF384_MA1125.2 8 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 273 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 303 bp overlap
ZNF680 2 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif ES_0h ES_0h-ZNF680_MA1729.2 11 bp overlap
ZNF692 2 datasets
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif ES_0h ES_0h-ZNF692_MA1986.2 8 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zfp961 1 dataset
Motif ES_0h ES_0h-Zfp961_MA2126.1 8 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
Znf423 1 dataset
Motif ES_0h ES_0h-Znf423_MA0116.1 15 bp overlap