chr7 : 151,306,906 – 151,307,424
518 bp 60 TFs 13 linked genes
This 518 bp open chromatin element is linked to 13 target genes and is bound by 60 transcription factors.
Linked Genes
13 genes
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NUB1 34.7 kb Distal Multiome
SMARCD3 58.4 kb Distal Multiome+HiCAR
CHPF2 74.6 kb Distal Multiome+HiCAR
ABCF2 79.9 kb Distal Multiome
WDR86 103.0 kb Distal Multiome
WDR86-AS1 103.5 kb Distal Multiome
RHEB 212.8 kb Distal Multiome
AGAP3 220.6 kb Distal Multiome
TMUB1 223.7 kb Distal Multiome
FASTK 226.3 kb Distal Multiome
SLC4A2 247.5 kb Distal Multiome
CDK5 249.2 kb Distal Multiome
ABCB8 278.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:151,301,906 – 151,312,424
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
60 transcription factors
Source
Cell type
BHLHE22 1 dataset
Motif DE_72h DE_72h-BHLHE22_MA1635.2 6 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 136 bp overlap
CTCF 1 dataset
ChIP HT-1080 GSE135580.CTCF.HT-1080 287 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 380 bp overlap
ChIP BLaER1 ENCFF031ISE 55 bp overlap
ESR1 9 datasets
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 137 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 99 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 203 bp overlap
ChIP MCF-7_E2-80min-ERalpha GSE94023.ESR1.MCF-7_E2-80min-ERalpha 115 bp overlap
ChIP MCF-7_SHCTR_E2_TNF GSE59530.ESR1.MCF-7_SHCTR_E2_TNF 198 bp overlap
ChIP U2OS_100nM-E2 GSE151039.ESR1.U2OS_100nM-E2 205 bp overlap
ChIP U2OS_10nM-E2 GSE151039.ESR1.U2OS_10nM-E2 222 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 195 bp overlap
ChIP U2OS_E2 GSE26110.ESR1.U2OS_E2 203 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 151 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 137 bp overlap
ESR2 2 datasets
ChIP MDA-MB-231_LY500307 GSE108979.ESR2.MDA-MB-231_LY500307 197 bp overlap
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 226 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 265 bp overlap
Ebf4 1 dataset
Motif DE_72h DE_72h-Ebf4_MA2122.1 11 bp overlap
FOXN3 1 dataset
Motif DE_72h DE_72h-FOXN3_MA1489.1 8 bp overlap
FOXP2 1 dataset
Motif DE_72h DE_72h-FOXP2_MA0593.2 9 bp overlap
GATA1 1 dataset
Motif DE_72h DE_72h-GATA1_MA0035.5 7 bp overlap
GATA2 1 dataset
Motif DE_72h DE_72h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 345 bp overlap
ChIP DE DE-GATA4-2 402 bp overlap
Motif DE_72h DE_72h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 351 bp overlap
GATA5 1 dataset
Motif DE_72h DE_72h-GATA5_MA0766.3 8 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 347 bp overlap
ChIP DE DE-GATA6-2 357 bp overlap
Motif DE_72h DE_72h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 364 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 193 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 272 bp overlap
ChIP foregut GSE117136.GATA6.foregut 305 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 303 bp overlap
GFI1 1 dataset
Motif DE_72h DE_72h-GFI1_MA0038.3 11 bp overlap
Gata3 1 dataset
Motif DE_72h DE_72h-Gata3_MA0037.5 8 bp overlap
Gfi1B 1 dataset
Motif DE_72h DE_72h-Gfi1B_MA0483.2 10 bp overlap
JUN 1 dataset
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
NFYA 1 dataset
Motif DE_72h DE_72h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_72h DE_72h-NFYC_MA1644.2 7 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_72h DE_72h-NHLH2_MA1529.2 16 bp overlap
Neurod2 1 dataset
Motif DE_72h DE_72h-Neurod2_MA1993.2 6 bp overlap
OSR2 1 dataset
Motif DE_72h DE_72h-OSR2_MA1646.2 8 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 283 bp overlap
Plagl1 1 dataset
Motif DE_72h DE_72h-Plagl1_MA1615.2 8 bp overlap
RELA 1 dataset
ChIP 786-O GSE86092.RELA.786-O 292 bp overlap
SIN3A 1 dataset
ChIP K-562 ENCSR920BLG.SIN3A.K-562 148 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 478 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX15 1 dataset
Motif DE_72h DE_72h-SOX15_MA1152.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 403 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 350 bp overlap
SOX2 1 dataset
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX4 2 datasets
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
ChIP MRC-5_1DPT GSE75910.SOX4.MRC-5_1DPT 56 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SRY 1 dataset
Motif DE_72h DE_72h-SRY_MA0084.2 7 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
TRPS1 1 dataset
Motif DE_72h DE_72h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
ZBTB32 1 dataset
Motif DE_72h DE_72h-ZBTB32_MA1580.1 10 bp overlap
ZBTB6 1 dataset
Motif DE_72h DE_72h-ZBTB6_MA1581.2 9 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 280 bp overlap
ZKSCAN3 1 dataset
Motif DE_72h DE_72h-ZKSCAN3_MA1973.2 14 bp overlap
ZNF214 1 dataset
Motif DE_72h DE_72h-ZNF214_MA1975.2 13 bp overlap
ZNF449 1 dataset
Motif DE_72h DE_72h-ZNF449_MA1656.2 10 bp overlap
ZNF528 1 dataset
Motif DE_72h DE_72h-ZNF528_MA1597.1 17 bp overlap
ZNF558 3 datasets
ChIP HEK293 ENCFF994JWH 144 bp overlap
ChIP HEK293 ENCSR447ZTA.ZNF558.HEK293 50 bp overlap
ChIP HEK293T GSE78099.ZNF558.HEK293T 110 bp overlap
ZNF682 1 dataset
Motif DE_72h DE_72h-ZNF682_MA1599.2 11 bp overlap
ZNF692 1 dataset
Motif DE_72h DE_72h-ZNF692_MA1986.2 8 bp overlap
Huangfu Lab · Publications · Resources · Contact